Chlamydia trachomatis G/11222

Oregon State University

Genome Size: 1.0 megabases, Released Date: May 21, 2010 #19822

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
CP001888
1017.9 KB
927 CDS

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References

Genome sequencing of recent clinical Chlamydia trachomatis strains identifies loci associated with tissue tropism and regions of apparent recombination
Jeffrey,B.M., Suchland,R.J., Quinn,K.L., Davidson,J.R., Stamm,W.E. and Rockey,D.D. Infect. Immun. 78 (6), 2544-2553 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Chlamydia trachomatis G/11222

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Sequences

References

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