Chlamydia trachomatis L2b/UCH-1/proctitis

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Genome Size: 1.0 megabases, GC Content: 41.3%, Released Date: Jan. 17, 2008 #16849

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_010280
1014.5 KB
874 CDS

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References

Chlamydia trachomatis: Genome sequence analysis of lymphogranuloma venereum isolates
Thomson,N.R., Holden,M.T., Carder,C., Lennard,N., Lockey,S.J., Marsh,P., Skipp,P., O'Connor,C.D., Goodhead,I., Norbertzcak,H., Harris,B., Ormond,D., Rance,R., Quail,M.A., Parkhill,J., Stephens,R.S. and Clarke,I.N. Genome Res. 18 (1), 161-171 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Chlamydia trachomatis L2b/UCH-1/proctitis

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Sequences

References

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