Chlamydia trachomatis Sweden2

Wellcome Trust Sanger Institute

Genome Size: 1.0 megabases, Released Date: Feb. 23, 2010 #19825

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
FN652779
1018.4 KB
889 CDS

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References

The Swedish new variant of Chlamydia trachomatis: genome sequence, morphology, cell tropism and phenotypic characterization
Unemo,M., Seth-Smith,H.M., Cutcliffe,L.T., Skilton,R.J., Barlow,D., Goulding,D., Persson,K., Harris,S.R., Kelly,A., Bjartling,C., Fredlund,H., Olcen,P., Thomson,N.R. and Clarke,I.N. Microbiology (Reading, Engl.) 156 (PT 5), 1394-1404 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Chlamydia trachomatis Sweden2

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Sequences

References

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