Chlamydophila abortus S26/3

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Genome Size: 1.14 megabases, GC Content: 39.9%, Released Date: April 1, 2005 #16850

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_004552
1.1 MB
932 CDS

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References

The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation
Thomson,N.R., Yeats,C., Bell,K., Holden,M.T., Bentley,S.D., Livingstone,M., Cerdeno-Tarraga,A.M., Harris,B., Doggett,J., Ormond,D., Mungall,K., Clarke,K., Feltwell,T., Hance,Z., Sanders,M., Quail,M.A., Price,C., Barrell,B.G., Parkhill,J. and Longbottom,D. Genome Res. 15 (5), 629-640 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Chlamydophila abortus S26/3

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Sequences

References

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