Chlamydophila pneumoniae AR39

TIGR

Genome Size: 1.22985 megabases, GC Content: 40.6%, Released Date: Feb. 24, 2000 #19826

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

Chlamydia phage CPAR39, complete genome
NC_002180
4.4 KB
7 CDS

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complete genome
NC_002179
1.2 MB
1112 CDS

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References

Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
Read,T.D., Brunham,R., Shen,C., Gill,S.R., Heidelberg,J.F., White,O., Hickey,E.K., Peterson,J., Umayam,L.A., Utterback,T., Berry,K., Bass,S., Linher,K., Weidman,J., Khouri,H., Craven,B., Bowman,C., Dodson,R., Gwinn,M., Nelson,W., DeBoy,R., Kolonay,J., McClarty,G., Salzberg,S.L., Eisen,J. and Fraser,C.M. Nucleic Acids Res. 28 (6), 1397-1406 (2000)
PubMed, PubGet, HubMed

Taxonomy

External Links

Chlamydophila pneumoniae AR39

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Sequences

References

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