Chlamydophila pneumoniae J138

Yamaguchi Univ., Japan

Genome Size: 1.2 megabases, GC Content: 40.6%, Released Date: June 28, 2000 #16855

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_002491
1.2 MB
1069 CDS

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References

Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA
Shirai,M., Hirakawa,H., Kimoto,M., Tabuchi,M., Kishi,F., Ouchi,K., Shiba,T., Ishii,K., Hattori,M., Kuhara,S. and Nakazawa,T. Nucleic Acids Res. 28 (12), 2311-2314 (2000)
PubMed, PubGet, HubMed
Comparison of outer membrane protein genes omp and pmp in the whole genome sequences of Chlamydia pneumoniae isolates from Japan and the United States
Shirai,M., Hirakawa,H., Ouchi,K., Tabuchi,M., Kishi,F., Kimoto,M., Takeuchi,H., Nishida,J., Shibata,K., Fujinaga,R., Yoneda,H., Matsushima,H., Tanaka,C., Furukawa,S., Miura,K., Nakazawa,A., Ishii,K., Shiba,T., Hattori,M., Kuhara,S. and Nakazawa,T. J. Infect. Dis. 181, S524-S527 (2000)
PubMed, PubGet, HubMed

Taxonomy

External Links

Chlamydophila pneumoniae J138

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Sequences

References

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