Chlorobium ferrooxidans DSM 13031

DOE Joint Genome Institute

GC Content: 50.1%, Released Date: July 13, 2006 #17930

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AASE01000001
323.3 KB
286 CDS

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whole genome shotgun sequence
NZ_AASE01000002
235.8 KB
204 CDS

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whole genome shotgun sequence
NZ_AASE01000003
156.0 KB
147 CDS

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whole genome shotgun sequence
NZ_AASE01000004
155.1 KB
141 CDS

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whole genome shotgun sequence
NZ_AASE01000005
132.5 KB
80 CDS

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whole genome shotgun sequence
NZ_AASE01000006
130.7 KB
115 CDS

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whole genome shotgun sequence
NZ_AASE01000007
115.7 KB
94 CDS

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whole genome shotgun sequence
NZ_AASE01000008
84.8 KB
84 CDS

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whole genome shotgun sequence
NZ_AASE01000009
71.6 KB
60 CDS

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whole genome shotgun sequence
NZ_AASE01000010
66.9 KB
64 CDS

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whole genome shotgun sequence
NZ_AASE01000011
66.6 KB
33 CDS

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whole genome shotgun sequence
NZ_AASE01000012
64.3 KB
53 CDS

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whole genome shotgun sequence
NZ_AASE01000013
62.8 KB
70 CDS

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whole genome shotgun sequence
NZ_AASE01000014
62.5 KB
46 CDS

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whole genome shotgun sequence
NZ_AASE01000015
62.1 KB
51 CDS

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whole genome shotgun sequence
NZ_AASE01000016
60.4 KB
54 CDS

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whole genome shotgun sequence
NZ_AASE01000017
57.8 KB
54 CDS

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whole genome shotgun sequence
NZ_AASE01000018
51.5 KB
33 CDS

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whole genome shotgun sequence
NZ_AASE01000019
46.8 KB
40 CDS

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whole genome shotgun sequence
NZ_AASE01000020
38.8 KB
42 CDS

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whole genome shotgun sequence
NZ_AASE01000021
33.4 KB
33 CDS

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whole genome shotgun sequence
NZ_AASE01000022
33.1 KB
34 CDS

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whole genome shotgun sequence
NZ_AASE01000023
32.6 KB
34 CDS

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whole genome shotgun sequence
NZ_AASE01000024
31.1 KB
29 CDS

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whole genome shotgun sequence
NZ_AASE01000025
27.6 KB
26 CDS

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whole genome shotgun sequence
NZ_AASE01000026
27.2 KB
31 CDS

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whole genome shotgun sequence
NZ_AASE01000027
25.1 KB
26 CDS

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whole genome shotgun sequence
NZ_AASE01000028
23.6 KB
21 CDS

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whole genome shotgun sequence
NZ_AASE01000029
22.3 KB
19 CDS

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whole genome shotgun sequence
NZ_AASE01000030
21.7 KB
18 CDS

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whole genome shotgun sequence
NZ_AASE01000031
17.6 KB
17 CDS

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whole genome shotgun sequence
NZ_AASE01000032
16.4 KB
18 CDS

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whole genome shotgun sequence
NZ_AASE01000033
13.2 KB
13 CDS

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whole genome shotgun sequence
NZ_AASE01000034
12.8 KB
11 CDS

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whole genome shotgun sequence
NZ_AASE01000035
11.4 KB
10 CDS

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whole genome shotgun sequence
NZ_AASE01000036
10.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AASE01000037
10.1 KB
9 CDS

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whole genome shotgun sequence
NZ_AASE01000038
9.6 KB
9 CDS

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whole genome shotgun sequence
NZ_AASE01000039
9.3 KB
13 CDS

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whole genome shotgun sequence
NZ_AASE01000040
9.0 KB
9 CDS

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whole genome shotgun sequence
NZ_AASE01000041
7.8 KB
0 CDS

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whole genome shotgun sequence
NZ_AASE01000042
7.4 KB
9 CDS

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whole genome shotgun sequence
NZ_AASE01000043
5.3 KB
3 CDS

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whole genome shotgun sequence
NZ_AASE01000044
5.1 KB
4 CDS

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whole genome shotgun sequence
NZ_AASE01000045
4.7 KB
5 CDS

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whole genome shotgun sequence
NZ_AASE01000046
3.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AASE01000047
2.2 KB
2 CDS

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Taxonomy

External Links

Chlorobium ferrooxidans DSM 13031

Search Genome

Sequences

PubMed Search for Chlorobium ferrooxidans DSM 13031

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