Chthoniobacter flavus Ellin428

DOE Joint Genome Institute

GC Content: 61.1%, Released Date: Aug. 15, 2008 #17932

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABVL01000001
659.4 KB
595 CDS

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whole genome shotgun sequence
NZ_ABVL01000002
595.4 KB
525 CDS

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whole genome shotgun sequence
NZ_ABVL01000003
544.9 KB
522 CDS

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whole genome shotgun sequence
NZ_ABVL01000004
511.3 KB
382 CDS

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whole genome shotgun sequence
NZ_ABVL01000005
363.8 KB
345 CDS

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whole genome shotgun sequence
NZ_ABVL01000006
354.8 KB
320 CDS

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whole genome shotgun sequence
NZ_ABVL01000007
313.5 KB
267 CDS

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whole genome shotgun sequence
NZ_ABVL01000008
283.1 KB
242 CDS

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whole genome shotgun sequence
NZ_ABVL01000009
262.6 KB
250 CDS

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whole genome shotgun sequence
NZ_ABVL01000010
252.0 KB
231 CDS

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whole genome shotgun sequence
NZ_ABVL01000011
210.8 KB
148 CDS

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whole genome shotgun sequence
NZ_ABVL01000012
207.5 KB
200 CDS

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whole genome shotgun sequence
NZ_ABVL01000013
207.2 KB
198 CDS

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whole genome shotgun sequence
NZ_ABVL01000014
198.8 KB
154 CDS

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whole genome shotgun sequence
NZ_ABVL01000015
196.2 KB
140 CDS

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whole genome shotgun sequence
NZ_ABVL01000016
183.0 KB
168 CDS

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whole genome shotgun sequence
NZ_ABVL01000017
150.1 KB
132 CDS

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whole genome shotgun sequence
NZ_ABVL01000018
146.6 KB
127 CDS

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whole genome shotgun sequence
NZ_ABVL01000019
135.9 KB
92 CDS

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whole genome shotgun sequence
NZ_ABVL01000020
129.7 KB
77 CDS

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whole genome shotgun sequence
NZ_ABVL01000021
107.2 KB
84 CDS

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whole genome shotgun sequence
NZ_ABVL01000022
97.1 KB
87 CDS

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whole genome shotgun sequence
NZ_ABVL01000023
93.7 KB
77 CDS

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whole genome shotgun sequence
NZ_ABVL01000024
91.1 KB
86 CDS

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whole genome shotgun sequence
NZ_ABVL01000025
89.7 KB
56 CDS

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whole genome shotgun sequence
NZ_ABVL01000026
85.4 KB
86 CDS

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whole genome shotgun sequence
NZ_ABVL01000027
84.4 KB
94 CDS

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whole genome shotgun sequence
NZ_ABVL01000028
82.2 KB
60 CDS

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whole genome shotgun sequence
NZ_ABVL01000029
74.9 KB
90 CDS

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whole genome shotgun sequence
NZ_ABVL01000030
73.9 KB
76 CDS

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whole genome shotgun sequence
NZ_ABVL01000031
70.1 KB
67 CDS

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whole genome shotgun sequence
NZ_ABVL01000032
65.3 KB
41 CDS

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whole genome shotgun sequence
NZ_ABVL01000033
57.8 KB
47 CDS

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whole genome shotgun sequence
NZ_ABVL01000034
56.5 KB
51 CDS

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whole genome shotgun sequence
NZ_ABVL01000035
55.5 KB
45 CDS

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whole genome shotgun sequence
NZ_ABVL01000036
49.3 KB
45 CDS

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whole genome shotgun sequence
NZ_ABVL01000037
48.4 KB
53 CDS

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whole genome shotgun sequence
NZ_ABVL01000038
46.8 KB
50 CDS

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whole genome shotgun sequence
NZ_ABVL01000039
37.2 KB
35 CDS

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whole genome shotgun sequence
NZ_ABVL01000040
36.7 KB
38 CDS

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whole genome shotgun sequence
NZ_ABVL01000041
35.6 KB
25 CDS

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whole genome shotgun sequence
NZ_ABVL01000042
34.6 KB
44 CDS

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whole genome shotgun sequence
NZ_ABVL01000043
32.1 KB
29 CDS

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whole genome shotgun sequence
NZ_ABVL01000044
29.8 KB
23 CDS

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whole genome shotgun sequence
NZ_ABVL01000045
26.1 KB
22 CDS

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whole genome shotgun sequence
NZ_ABVL01000046
25.8 KB
25 CDS

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whole genome shotgun sequence
NZ_ABVL01000047
24.1 KB
16 CDS

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whole genome shotgun sequence
NZ_ABVL01000048
22.5 KB
24 CDS

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whole genome shotgun sequence
NZ_ABVL01000049
18.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ABVL01000050
17.1 KB
17 CDS

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whole genome shotgun sequence
NZ_ABVL01000051
12.7 KB
8 CDS

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whole genome shotgun sequence
NZ_ABVL01000052
11.4 KB
8 CDS

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whole genome shotgun sequence
NZ_ABVL01000053
11.2 KB
13 CDS

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whole genome shotgun sequence
NZ_ABVL01000054
11.1 KB
13 CDS

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whole genome shotgun sequence
NZ_ABVL01000055
6.8 KB
10 CDS

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whole genome shotgun sequence
NZ_ABVL01000056
6.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ABVL01000057
6.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ABVL01000058
5.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABVL01000059
5.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABVL01000060
4.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABVL01000061
4.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABVL01000062
2.9 KB
5 CDS

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Taxonomy

External Links

Chthoniobacter flavus Ellin428

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Sequences

PubMed Search for Chthoniobacter flavus Ellin428

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