Clostridium botulinum A str. ATCC 19397

Los Alamos National Laboratory , DOE Joint Genome Institute , J. Craig Venter Institute

Genome Size: 3.9 megabases, GC Content: 28.2%, Released Date: July 20, 2007 #16877

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_009697
3.7 MB
3550 CDS

Table view
Circular View
Artemis Viewer

References

Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids
Smith,T.J., Hill,K.K., Foley,B.T., Detter,J.C., Munk,A.C., Bruce,D.C., Doggett,N.A., Smith,L.A., Marks,J.D., Xie,G. and Brettin,T.S. PLoS ONE 2 (12), E1271 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Clostridium botulinum A str. ATCC 19397

Search Genome

Sequences

References

Related Genomes