Clostridium botulinum A str. ATCC 3502

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Genome Size: 3.92 megabases, GC Content: 28.2%, Released Date: May 24, 2007 #16878

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes
  Sebaihia,M., Peck,M.W., Minton,N.P., Thomson,N.R., Holden,M.T., Mitchell,W.J., Carter,A.T., Bentley,S.D., Mason,D.R., Crossman,L., Paul,C.J., Ivens,A., Wells-Bennik,M.H., Davis,I.J., Cerdeno-Tarraga,A.M., Churcher,C., Quail,M.A., Chillingworth,T., Feltwell,T., Fraser,A., Goodhead,I., Hance,Z., Jagels,K., Larke,N., Maddison,M., Moule,S., Mungall,K., Norbertczak,H., Rabbinowitsch,E., Sanders,M., Simmonds,M., White,B., Whithead,S. and Parkhill,J. Genome Res. 17 (7), 1082-1092 (2007)
  PubMed, PubGet, HubMed

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