Clostridium botulinum A3 str. Loch Maree

Los Alamos National Laboratory , DOE Joint Genome Institute , J. Craig Venter Insititute

Genome Size: 4.27 megabases, GC Content: 28.1%, Released Date: March 5, 2008 #16881

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
NC_010520
3.8 MB
3654 CDS

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plasmid pCLK
NC_010418
260.5 KB
329 CDS

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References

Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids
Smith,T.J., Hill,K.K., Foley,B.T., Detter,J.C., Munk,A.C., Bruce,D.C., Doggett,N.A., Smith,L.A., Marks,J.D., Xie,G. and Brettin,T.S. PLoS ONE 2 (12), E1271 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Clostridium botulinum A3 str. Loch Maree

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Sequences

References

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