Clostridium botulinum Ba4 str. 657

Los Alamos National Laboratory , DOE Joint Genome Institute , The J. Craig Venter Institute

Genome Size: 4.28 megabases, GC Content: 28.0%, Released Date: May 1, 2009 #16884

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_012658
3.8 MB
3690 CDS

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plasmid pCLJ
NC_012654
263.7 KB
306 CDS

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plasmid pCLJ2
NC_012657
9.7 KB
6 CDS

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References

Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids
Smith,T.J., Hill,K.K., Foley,B.T., Detter,J.C., Munk,A.C., Bruce,D.C., Doggett,N.A., Smith,L.A., Marks,J.D., Xie,G. and Brettin,T.S. PLoS ONE 2 (12), E1271 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Clostridium botulinum Ba4 str. 657

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Sequences

References

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