Clostridium botulinum D str. 1873

Los Alamos National Laboratory

Genome Size: 6814.0 megabases, Released Date: July 9, 2009 #17940

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACSJ01000001
432.4 KB
399 CDS

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whole genome shotgun sequence
NZ_ACSJ01000002
2.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACSJ01000003
16.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ACSJ01000004
2.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ACSJ01000005
7.1 KB
8 CDS

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whole genome shotgun sequence
NZ_ACSJ01000006
165.1 KB
162 CDS

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whole genome shotgun sequence
NZ_ACSJ01000007
1.4 MB
1362 CDS

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whole genome shotgun sequence
NZ_ACSJ01000008
31.1 KB
26 CDS

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whole genome shotgun sequence
NZ_ACSJ01000009
100.6 KB
95 CDS

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whole genome shotgun sequence
NZ_ACSJ01000010
6.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ACSJ01000011
2.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ACSJ01000012
6.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ACSJ01000013
10.3 KB
17 CDS

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whole genome shotgun sequence
NZ_ACSJ01000014
3.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACSJ01000015
16.9 KB
13 CDS

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whole genome shotgun sequence
NZ_ACSJ01000016
8.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ACSJ01000017
72.9 KB
79 CDS

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whole genome shotgun sequence
NZ_ACSJ01000018
14.1 KB
17 CDS

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whole genome shotgun sequence
NZ_ACSJ01000019
6.7 KB
6 CDS

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Taxonomy

External Links

Clostridium botulinum D str. 1873

Search Genome

Sequences

PubMed Search for Clostridium botulinum D str. 1873

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