Clostridium botulinum E1 str. 'BoNT E Beluga'

Los Alamos National Laboratory

Genome Size: 4.0 megabases, GC Content: 27.4%, Released Date: July 1, 2009 #20217

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

CLO.Contig139, whole genome shotgun sequence
NZ_ACSC01000001
3.2 KB
0 CDS

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CLO.Contig141, whole genome shotgun sequence
NZ_ACSC01000002
3.7 MB
0 CDS

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CLO.Contig136, whole genome shotgun sequence
NZ_ACSC01000003
16.5 KB
7 CDS

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CLO.Contig140, whole genome shotgun sequence
NZ_ACSC01000004
4.9 KB
1 CDS

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CLO.Contig142, whole genome shotgun sequence
NZ_ACSC01000005
4.1 KB
1 CDS

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CLO.Contig137, whole genome shotgun sequence
NZ_ACSC01000006
104.2 KB
77 CDS

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Taxonomy

External Links

Clostridium botulinum E1 str. 'BoNT E Beluga'

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Sequences

PubMed Search for Clostridium botulinum E1 str. 'BoNT E Beluga'

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