Clostridium difficile 630

Welcome Trust Sanger Institute

Genome Size: 4.31 megabases, GC Content: 29.1%, Released Date: Sept. 20, 2006 #16888

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome
  Sebaihia,M., Wren,B.W., Mullany,P., Fairweather,N.F., Minton,N., Stabler,R., Thomson,N.R., Roberts,A.P., Cerdeno-Tarraga,A.M., Wang,H., Holden,M.T., Wright,A., Churcher,C., Quail,M.A., Baker,S., Bason,N., Brooks,K., Chillingworth,T., Cronin,A., Davis,P., Dowd,L., Fraser,A., Feltwell,T., Hance,Z., Holroyd,S., Jagels,K., Moule,S., Mungall,K., Price,C., Rabbinowitsch,E., Sharp,S., Simmonds,M., Stevens,K., Unwin,L., Whithead,S., Dupuy,B., Dougan,G., Barrell,B. and Parkhill,J. Nat. Genet. 38 (7), 779-786 (2006)
  PubMed, PubGet, HubMed

Related Genomes

• Clostridium difficile CD196
• Clostridium difficile R20291
• Clostridium difficile ATCC 43255
• Clostridium difficile CIP 107932
• Clostridium difficile QCD-23m63
• Clostridium difficile QCD-32g58
• Clostridium difficile QCD-37x79
• Clostridium difficile QCD-63q42
• Clostridium difficile QCD-66c26
• Clostridium difficile QCD-76w55
• Clostridium difficile QCD-97b34
• Clostridium difficile 2007855
• Clostridium difficile BI1
• Clostridium difficile CF5
• Clostridium difficile M120
• Clostridium difficile M68
• Clostridium difficile 6407
• Clostridium difficile 6466
• Clostridium difficile 6503
• Clostridium difficile 6534
• Clostridium difficile NAP07
• Clostridium difficile NAP08