Clostridium difficile ATCC 43255

McGill University, Canada

GC Content: 28.6%, Released Date: Feb. 12, 2008 #17946

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABKJ02000001
8.9 KB
10 CDS

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whole genome shotgun sequence
NZ_ABKJ02000002
19.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ABKJ02000003
30.7 KB
27 CDS

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whole genome shotgun sequence
NZ_ABKJ02000004
38.2 KB
53 CDS

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whole genome shotgun sequence
NZ_ABKJ02000005
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABKJ02000006
5.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKJ02000007
153.6 KB
161 CDS

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whole genome shotgun sequence
NZ_ABKJ02000008
121.9 KB
126 CDS

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whole genome shotgun sequence
NZ_ABKJ02000009
18.0 KB
18 CDS

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whole genome shotgun sequence
NZ_ABKJ02000010
97.9 KB
79 CDS

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whole genome shotgun sequence
NZ_ABKJ02000011
42.5 KB
37 CDS

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whole genome shotgun sequence
NZ_ABKJ02000012
135.2 KB
116 CDS

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whole genome shotgun sequence
NZ_ABKJ02000013
205.2 KB
168 CDS

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whole genome shotgun sequence
NZ_ABKJ02000014
217.3 KB
200 CDS

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whole genome shotgun sequence
NZ_ABKJ02000015
305.2 KB
309 CDS

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whole genome shotgun sequence
NZ_ABKJ02000016
208.3 KB
195 CDS

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whole genome shotgun sequence
NZ_ABKJ02000017
96.8 KB
108 CDS

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whole genome shotgun sequence
NZ_ABKJ02000018
1.2 MB
1183 CDS

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whole genome shotgun sequence
NZ_ABKJ02000019
639.6 KB
558 CDS

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whole genome shotgun sequence
NZ_ABKJ02000020
140.4 KB
132 CDS

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whole genome shotgun sequence
NZ_ABKJ02000021
131.9 KB
137 CDS

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whole genome shotgun sequence
NZ_ABKJ02000022
145.0 KB
147 CDS

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whole genome shotgun sequence
NZ_ABKJ02000023
523 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKJ02000024
524 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKJ02000025
524 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKJ02000026
532 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKJ02000027
587 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKJ02000028
817 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABKJ02000029
909 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABKJ02000030
909 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABKJ02000031
970 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABKJ02000032
982 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKJ02000033
999 bytes
4 CDS

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whole genome shotgun sequence
NZ_ABKJ02000034
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKJ02000035
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKJ02000036
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKJ02000037
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKJ02000038
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKJ02000039
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABKJ02000040
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKJ02000041
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKJ02000042
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKJ02000043
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKJ02000044
2.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABKJ02000045
2.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ABKJ02000046
3.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ABKJ02000047
3.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ABKJ02000048
3.9 KB
7 CDS

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whole genome shotgun sequence
NZ_ABKJ02000049
4.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ABKJ02000050
4.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABKJ02000051
4.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ABKJ02000052
4.9 KB
8 CDS

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whole genome shotgun sequence
NZ_ABKJ02000053
5.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ABKJ02000054
9.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ABKJ02000055
9.8 KB
22 CDS

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Taxonomy

External Links

Clostridium difficile ATCC 43255

Search Genome

Sequences

PubMed Search for Clostridium difficile ATCC 43255

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