Clostridium difficile BI1

Wellcome Trust Sanger Institute

Genome Size: 4.445 megabases, Released Date: March 24, 2010 #19832

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

chromosome
FN668941
3.9 MB
0 CDS

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plasmid pCDBI1
FN668942
44.2 KB
0 CDS

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putative phage or plasmid sequence
FN668943
293.8 KB
0 CDS

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References

Evolutionary dynamics of Clostridium difficile over short and long time scales
He,M., Sebaihia,M., Lawley,T.D., Stabler,R.A., Dawson,L.F., Martin,M.J., Holt,K.E., Seth-Smith,H.M., Quail,M.A., Rance,R., Brooks,K., Churcher,C., Harris,D., Bentley,S.D., Burrows,C., Clark,L., Corton,C., Murray,V., Rose,G., Thurston,S., van Tonder,A., Walker,D., Wren,B.W., Dougan,G. and Parkhill,J. Proc. Natl. Acad. Sci. U.S.A. 107 (16), 7527-7532 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Clostridium difficile BI1

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Sequences

References

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