Clostridium difficile CIP 107932

McGill University, Canada

GC Content: 28.3%, Released Date: Feb. 12, 2008 #17947

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABKK02000001
3.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKK02000002
5.7 KB
7 CDS

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whole genome shotgun sequence
NZ_ABKK02000003
69.5 KB
56 CDS

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whole genome shotgun sequence
NZ_ABKK02000004
21.4 KB
40 CDS

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whole genome shotgun sequence
NZ_ABKK02000005
224.9 KB
213 CDS

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whole genome shotgun sequence
NZ_ABKK02000006
65.5 KB
60 CDS

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whole genome shotgun sequence
NZ_ABKK02000007
13.8 KB
16 CDS

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whole genome shotgun sequence
NZ_ABKK02000008
5.3 KB
7 CDS

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whole genome shotgun sequence
NZ_ABKK02000009
27.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ABKK02000010
37.2 KB
37 CDS

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whole genome shotgun sequence
NZ_ABKK02000011
89.2 KB
80 CDS

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whole genome shotgun sequence
NZ_ABKK02000012
21.3 KB
17 CDS

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whole genome shotgun sequence
NZ_ABKK02000013
74.9 KB
59 CDS

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whole genome shotgun sequence
NZ_ABKK02000014
137.6 KB
111 CDS

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whole genome shotgun sequence
NZ_ABKK02000015
115.3 KB
113 CDS

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whole genome shotgun sequence
NZ_ABKK02000016
20.7 KB
16 CDS

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whole genome shotgun sequence
NZ_ABKK02000017
79.2 KB
67 CDS

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whole genome shotgun sequence
NZ_ABKK02000018
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKK02000019
74.9 KB
68 CDS

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whole genome shotgun sequence
NZ_ABKK02000020
111.3 KB
113 CDS

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whole genome shotgun sequence
NZ_ABKK02000021
283.1 KB
275 CDS

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whole genome shotgun sequence
NZ_ABKK02000022
147.9 KB
156 CDS

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whole genome shotgun sequence
NZ_ABKK02000023
50.2 KB
48 CDS

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whole genome shotgun sequence
NZ_ABKK02000024
125.9 KB
119 CDS

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whole genome shotgun sequence
NZ_ABKK02000025
222.0 KB
211 CDS

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whole genome shotgun sequence
NZ_ABKK02000026
345.9 KB
310 CDS

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whole genome shotgun sequence
NZ_ABKK02000027
110.9 KB
109 CDS

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whole genome shotgun sequence
NZ_ABKK02000028
230.6 KB
207 CDS

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whole genome shotgun sequence
NZ_ABKK02000029
125.5 KB
104 CDS

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whole genome shotgun sequence
NZ_ABKK02000030
132.2 KB
105 CDS

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whole genome shotgun sequence
NZ_ABKK02000031
6.6 KB
8 CDS

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whole genome shotgun sequence
NZ_ABKK02000032
137.3 KB
119 CDS

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whole genome shotgun sequence
NZ_ABKK02000033
144.5 KB
120 CDS

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whole genome shotgun sequence
NZ_ABKK02000034
183.3 KB
164 CDS

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whole genome shotgun sequence
NZ_ABKK02000035
115.3 KB
103 CDS

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whole genome shotgun sequence
NZ_ABKK02000036
59.8 KB
50 CDS

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whole genome shotgun sequence
NZ_ABKK02000037
37.1 KB
40 CDS

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whole genome shotgun sequence
NZ_ABKK02000038
93.8 KB
100 CDS

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whole genome shotgun sequence
NZ_ABKK02000039
40.9 KB
40 CDS

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whole genome shotgun sequence
NZ_ABKK02000040
54.5 KB
61 CDS

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whole genome shotgun sequence
NZ_ABKK02000041
70.4 KB
76 CDS

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whole genome shotgun sequence
NZ_ABKK02000042
542 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKK02000043
625 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKK02000044
651 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKK02000045
735 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKK02000046
763 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKK02000047
980 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKK02000048
985 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABKK02000049
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKK02000050
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABKK02000051
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKK02000052
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKK02000053
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABKK02000054
2.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ABKK02000055
5.2 KB
3 CDS

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Taxonomy

External Links

Clostridium difficile CIP 107932

Search Genome

Sequences

PubMed Search for Clostridium difficile CIP 107932

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