Clostridium difficile QCD-23m63

McGill University, Canada

GC Content: 28.6%, Released Date: Feb. 12, 2008 #17948

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABKL02000001
9.0 KB
10 CDS

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whole genome shotgun sequence
NZ_ABKL02000002
91.6 KB
96 CDS

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whole genome shotgun sequence
NZ_ABKL02000003
752 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKL02000004
5.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKL02000005
68.4 KB
60 CDS

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whole genome shotgun sequence
NZ_ABKL02000006
23.0 KB
24 CDS

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whole genome shotgun sequence
NZ_ABKL02000007
96.1 KB
94 CDS

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whole genome shotgun sequence
NZ_ABKL02000008
352.6 KB
328 CDS

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whole genome shotgun sequence
NZ_ABKL02000009
44.1 KB
39 CDS

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whole genome shotgun sequence
NZ_ABKL02000010
138.2 KB
127 CDS

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whole genome shotgun sequence
NZ_ABKL02000011
21.5 KB
23 CDS

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whole genome shotgun sequence
NZ_ABKL02000012
2.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKL02000013
130.8 KB
112 CDS

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whole genome shotgun sequence
NZ_ABKL02000014
3.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKL02000015
9.5 KB
12 CDS

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whole genome shotgun sequence
NZ_ABKL02000016
24.9 KB
28 CDS

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whole genome shotgun sequence
NZ_ABKL02000017
286.7 KB
288 CDS

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whole genome shotgun sequence
NZ_ABKL02000018
6.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ABKL02000019
72.3 KB
71 CDS

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whole genome shotgun sequence
NZ_ABKL02000020
242.3 KB
227 CDS

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whole genome shotgun sequence
NZ_ABKL02000021
41.0 KB
33 CDS

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whole genome shotgun sequence
NZ_ABKL02000022
64.2 KB
66 CDS

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whole genome shotgun sequence
NZ_ABKL02000023
20.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ABKL02000024
429.7 KB
413 CDS

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whole genome shotgun sequence
NZ_ABKL02000025
206.0 KB
186 CDS

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whole genome shotgun sequence
NZ_ABKL02000026
160.3 KB
150 CDS

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whole genome shotgun sequence
NZ_ABKL02000027
22.2 KB
16 CDS

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whole genome shotgun sequence
NZ_ABKL02000028
197.0 KB
174 CDS

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whole genome shotgun sequence
NZ_ABKL02000029
13.1 KB
14 CDS

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whole genome shotgun sequence
NZ_ABKL02000030
99.3 KB
77 CDS

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whole genome shotgun sequence
NZ_ABKL02000031
143.0 KB
123 CDS

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whole genome shotgun sequence
NZ_ABKL02000032
59.7 KB
50 CDS

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whole genome shotgun sequence
NZ_ABKL02000033
58.2 KB
57 CDS

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whole genome shotgun sequence
NZ_ABKL02000034
188.7 KB
158 CDS

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whole genome shotgun sequence
NZ_ABKL02000035
18.0 KB
17 CDS

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whole genome shotgun sequence
NZ_ABKL02000036
25.0 KB
22 CDS

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whole genome shotgun sequence
NZ_ABKL02000037
60.2 KB
57 CDS

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whole genome shotgun sequence
NZ_ABKL02000038
4.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ABKL02000039
107.9 KB
86 CDS

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whole genome shotgun sequence
NZ_ABKL02000040
122.4 KB
130 CDS

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whole genome shotgun sequence
NZ_ABKL02000041
37.6 KB
43 CDS

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whole genome shotgun sequence
NZ_ABKL02000042
110.6 KB
104 CDS

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whole genome shotgun sequence
NZ_ABKL02000043
500 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKL02000044
547 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKL02000045
613 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKL02000046
649 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKL02000047
666 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKL02000048
783 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKL02000049
872 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKL02000050
872 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKL02000051
879 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKL02000052
921 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKL02000053
955 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABKL02000054
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKL02000055
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKL02000056
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABKL02000057
2.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKL02000058
2.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKL02000059
2.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ABKL02000060
2.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKL02000061
4.3 KB
8 CDS

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Taxonomy

External Links

Clostridium difficile QCD-23m63

Search Genome

Sequences

PubMed Search for Clostridium difficile QCD-23m63

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