Clostridium difficile QCD-32g58

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

Genome Size: 3.92 megabases, GC Content: 28.5%, Released Date: Jan. 23, 2006 #17949

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAML04000001
9.8 KB
9 CDS

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whole genome shotgun sequence
NZ_AAML04000002
93.2 KB
107 CDS

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whole genome shotgun sequence
NZ_AAML04000003
295.3 KB
292 CDS

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whole genome shotgun sequence
NZ_AAML04000004
13.8 KB
17 CDS

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whole genome shotgun sequence
NZ_AAML04000005
6.1 KB
7 CDS

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whole genome shotgun sequence
NZ_AAML04000006
145.6 KB
141 CDS

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whole genome shotgun sequence
NZ_AAML04000007
469.7 KB
444 CDS

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whole genome shotgun sequence
NZ_AAML04000008
50.4 KB
61 CDS

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whole genome shotgun sequence
NZ_AAML04000009
4.0 KB
2 CDS

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whole genome shotgun sequence
NZ_AAML04000010
557.3 KB
606 CDS

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whole genome shotgun sequence
NZ_AAML04000011
314.9 KB
352 CDS

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whole genome shotgun sequence
NZ_AAML04000012
32.0 KB
29 CDS

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whole genome shotgun sequence
NZ_AAML04000013
442.0 KB
474 CDS

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whole genome shotgun sequence
NZ_AAML04000014
1.2 MB
1167 CDS

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whole genome shotgun sequence
NZ_AAML04000015
193.3 KB
183 CDS

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whole genome shotgun sequence
NZ_AAML04000016
166.8 KB
180 CDS

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Taxonomy

External Links

Clostridium difficile QCD-32g58

Search Genome

Sequences

PubMed Search for Clostridium difficile QCD-32g58

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