Clostridium difficile QCD-37x79

McGill University, Canada

GC Content: 28.4%, Released Date: Nov. 5, 2007 #17950

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABHG02000001
9.2 KB
10 CDS

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whole genome shotgun sequence
NZ_ABHG02000002
92.2 KB
98 CDS

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whole genome shotgun sequence
NZ_ABHG02000003
156.3 KB
139 CDS

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whole genome shotgun sequence
NZ_ABHG02000004
68.5 KB
75 CDS

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whole genome shotgun sequence
NZ_ABHG02000005
65.5 KB
61 CDS

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whole genome shotgun sequence
NZ_ABHG02000006
14.4 KB
17 CDS

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whole genome shotgun sequence
NZ_ABHG02000007
6.1 KB
8 CDS

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whole genome shotgun sequence
NZ_ABHG02000008
28.6 KB
22 CDS

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whole genome shotgun sequence
NZ_ABHG02000009
125.7 KB
114 CDS

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whole genome shotgun sequence
NZ_ABHG02000010
21.3 KB
18 CDS

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whole genome shotgun sequence
NZ_ABHG02000011
200.3 KB
162 CDS

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whole genome shotgun sequence
NZ_ABHG02000012
232.9 KB
210 CDS

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whole genome shotgun sequence
NZ_ABHG02000013
191.3 KB
183 CDS

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whole genome shotgun sequence
NZ_ABHG02000014
869 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABHG02000015
282.3 KB
274 CDS

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whole genome shotgun sequence
NZ_ABHG02000016
761 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABHG02000017
545.9 KB
538 CDS

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whole genome shotgun sequence
NZ_ABHG02000018
346.6 KB
316 CDS

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whole genome shotgun sequence
NZ_ABHG02000019
112.0 KB
112 CDS

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whole genome shotgun sequence
NZ_ABHG02000020
230.6 KB
205 CDS

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whole genome shotgun sequence
NZ_ABHG02000021
84.1 KB
74 CDS

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whole genome shotgun sequence
NZ_ABHG02000022
41.4 KB
33 CDS

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whole genome shotgun sequence
NZ_ABHG02000023
278.6 KB
231 CDS

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whole genome shotgun sequence
NZ_ABHG02000024
328.7 KB
285 CDS

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whole genome shotgun sequence
NZ_ABHG02000025
231.6 KB
213 CDS

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whole genome shotgun sequence
NZ_ABHG02000026
37.1 KB
39 CDS

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whole genome shotgun sequence
NZ_ABHG02000027
94.4 KB
100 CDS

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whole genome shotgun sequence
NZ_ABHG02000028
36.2 KB
40 CDS

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whole genome shotgun sequence
NZ_ABHG02000029
3.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHG02000030
878 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABHG02000031
125.9 KB
139 CDS

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whole genome shotgun sequence
NZ_ABHG02000032
506 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABHG02000033
532 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABHG02000034
651 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABHG02000035
921 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABHG02000036
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABHG02000037
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABHG02000038
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHG02000039
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHG02000040
2.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHG02000041
5.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHG02000042
9.4 KB
15 CDS

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whole genome shotgun sequence
NZ_ABHG02000043
36.0 KB
58 CDS

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whole genome shotgun sequence
NZ_ABHG02000044
39.6 KB
55 CDS

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whole genome shotgun sequence
NZ_ABHG02000045
134.0 KB
183 CDS

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Taxonomy

External Links

Clostridium difficile QCD-37x79

Search Genome

Sequences

PubMed Search for Clostridium difficile QCD-37x79

Related Genomes