Clostridium difficile QCD-63q42

McGill University, Canada

GC Content: 28.7%, Released Date: Nov. 5, 2007 #17951

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABHD02000001
9.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ABHD02000002
842 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABHD02000003
68.2 KB
53 CDS

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whole genome shotgun sequence
NZ_ABHD02000004
21.4 KB
39 CDS

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whole genome shotgun sequence
NZ_ABHD02000005
96.7 KB
84 CDS

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whole genome shotgun sequence
NZ_ABHD02000006
130.0 KB
134 CDS

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whole genome shotgun sequence
NZ_ABHD02000007
148.2 KB
132 CDS

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whole genome shotgun sequence
NZ_ABHD02000008
187.4 KB
151 CDS

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whole genome shotgun sequence
NZ_ABHD02000009
121.3 KB
102 CDS

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whole genome shotgun sequence
NZ_ABHD02000010
120.6 KB
115 CDS

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whole genome shotgun sequence
NZ_ABHD02000011
98.8 KB
84 CDS

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whole genome shotgun sequence
NZ_ABHD02000012
183.3 KB
179 CDS

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whole genome shotgun sequence
NZ_ABHD02000013
81.4 KB
82 CDS

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whole genome shotgun sequence
NZ_ABHD02000014
202.0 KB
194 CDS

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whole genome shotgun sequence
NZ_ABHD02000015
117.2 KB
121 CDS

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whole genome shotgun sequence
NZ_ABHD02000016
947 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABHD02000017
5.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ABHD02000018
3.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ABHD02000019
4.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ABHD02000020
3.0 KB
6 CDS

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whole genome shotgun sequence
NZ_ABHD02000021
921 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABHD02000022
73.5 KB
66 CDS

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whole genome shotgun sequence
NZ_ABHD02000023
115.8 KB
107 CDS

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whole genome shotgun sequence
NZ_ABHD02000024
100.6 KB
102 CDS

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whole genome shotgun sequence
NZ_ABHD02000025
1003.1 KB
935 CDS

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whole genome shotgun sequence
NZ_ABHD02000026
413.2 KB
341 CDS

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whole genome shotgun sequence
NZ_ABHD02000027
223.2 KB
203 CDS

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whole genome shotgun sequence
NZ_ABHD02000028
74.9 KB
69 CDS

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whole genome shotgun sequence
NZ_ABHD02000029
140.8 KB
120 CDS

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whole genome shotgun sequence
NZ_ABHD02000030
135.0 KB
142 CDS

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whole genome shotgun sequence
NZ_ABHD02000031
36.3 KB
40 CDS

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whole genome shotgun sequence
NZ_ABHD02000032
4.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHD02000033
103.5 KB
105 CDS

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whole genome shotgun sequence
NZ_ABHD02000034
602 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABHD02000035
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABHD02000036
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHD02000037
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHD02000038
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHD02000039
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHD02000040
1.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABHD02000041
1.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABHD02000042
2.0 KB
6 CDS

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whole genome shotgun sequence
NZ_ABHD02000043
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHD02000044
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHD02000045
2.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHD02000046
4.0 KB
11 CDS

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whole genome shotgun sequence
NZ_ABHD02000047
5.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHD02000048
5.8 KB
7 CDS

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whole genome shotgun sequence
NZ_ABHD02000049
7.0 KB
11 CDS

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whole genome shotgun sequence
NZ_ABHD02000050
7.6 KB
15 CDS

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whole genome shotgun sequence
NZ_ABHD02000051
8.6 KB
11 CDS

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whole genome shotgun sequence
NZ_ABHD02000052
9.4 KB
15 CDS

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whole genome shotgun sequence
NZ_ABHD02000053
12.2 KB
16 CDS

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whole genome shotgun sequence
NZ_ABHD02000054
12.9 KB
22 CDS

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whole genome shotgun sequence
NZ_ABHD02000055
17.4 KB
32 CDS

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whole genome shotgun sequence
NZ_ABHD02000056
18.5 KB
26 CDS

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whole genome shotgun sequence
NZ_ABHD02000057
22.7 KB
28 CDS

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whole genome shotgun sequence
NZ_ABHD02000058
24.3 KB
45 CDS

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whole genome shotgun sequence
NZ_ABHD02000059
62.6 KB
68 CDS

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whole genome shotgun sequence
NZ_ABHD02000060
69.5 KB
112 CDS

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Taxonomy

External Links

Clostridium difficile QCD-63q42

Search Genome

Sequences

PubMed Search for Clostridium difficile QCD-63q42

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