Clostridium difficile QCD-66c26

McGill University, Canada

GC Content: 28.5%, Released Date: Aug. 30, 2007 #17952

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABFD02000001
9.2 KB
9 CDS

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whole genome shotgun sequence
NZ_ABFD02000002
93.9 KB
98 CDS

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whole genome shotgun sequence
NZ_ABFD02000003
227.0 KB
216 CDS

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whole genome shotgun sequence
NZ_ABFD02000004
142.4 KB
129 CDS

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whole genome shotgun sequence
NZ_ABFD02000005
72.5 KB
61 CDS

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whole genome shotgun sequence
NZ_ABFD02000006
366.5 KB
323 CDS

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whole genome shotgun sequence
NZ_ABFD02000007
104.6 KB
88 CDS

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whole genome shotgun sequence
NZ_ABFD02000008
622.4 KB
614 CDS

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whole genome shotgun sequence
NZ_ABFD02000009
302.6 KB
281 CDS

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whole genome shotgun sequence
NZ_ABFD02000010
915.3 KB
832 CDS

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whole genome shotgun sequence
NZ_ABFD02000011
513.8 KB
431 CDS

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whole genome shotgun sequence
NZ_ABFD02000012
327.7 KB
296 CDS

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whole genome shotgun sequence
NZ_ABFD02000013
36.9 KB
38 CDS

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whole genome shotgun sequence
NZ_ABFD02000014
93.9 KB
99 CDS

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whole genome shotgun sequence
NZ_ABFD02000015
37.9 KB
40 CDS

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whole genome shotgun sequence
NZ_ABFD02000016
58.9 KB
62 CDS

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whole genome shotgun sequence
NZ_ABFD02000017
71.3 KB
75 CDS

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whole genome shotgun sequence
NZ_ABFD02000018
517 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFD02000019
568 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFD02000020
811 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFD02000021
860 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFD02000022
869 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFD02000023
873 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFD02000024
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFD02000025
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFD02000026
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFD02000027
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFD02000028
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFD02000029
2.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFD02000030
5.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFD02000031
13.8 KB
17 CDS

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Taxonomy

External Links

Clostridium difficile QCD-66c26

Search Genome

Sequences

PubMed Search for Clostridium difficile QCD-66c26

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