Clostridium difficile QCD-76w55

McGill University, Canada

GC Content: 28.1%, Released Date: Nov. 5, 2007 #17953

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABHE02000001
10.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ABHE02000002
52.8 KB
44 CDS

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whole genome shotgun sequence
NZ_ABHE02000003
38.2 KB
53 CDS

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whole genome shotgun sequence
NZ_ABHE02000004
156.5 KB
140 CDS

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whole genome shotgun sequence
NZ_ABHE02000005
69.5 KB
78 CDS

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whole genome shotgun sequence
NZ_ABHE02000006
66.6 KB
61 CDS

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whole genome shotgun sequence
NZ_ABHE02000007
58.2 KB
83 CDS

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whole genome shotgun sequence
NZ_ABHE02000008
5.3 KB
7 CDS

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whole genome shotgun sequence
NZ_ABHE02000009
28.8 KB
22 CDS

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whole genome shotgun sequence
NZ_ABHE02000010
37.8 KB
37 CDS

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whole genome shotgun sequence
NZ_ABHE02000011
51.4 KB
44 CDS

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whole genome shotgun sequence
NZ_ABHE02000012
21.0 KB
17 CDS

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whole genome shotgun sequence
NZ_ABHE02000013
17.1 KB
18 CDS

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whole genome shotgun sequence
NZ_ABHE02000014
22.5 KB
18 CDS

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whole genome shotgun sequence
NZ_ABHE02000015
29.4 KB
27 CDS

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whole genome shotgun sequence
NZ_ABHE02000016
185.4 KB
148 CDS

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whole genome shotgun sequence
NZ_ABHE02000017
113.5 KB
113 CDS

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whole genome shotgun sequence
NZ_ABHE02000018
2.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABHE02000019
19.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ABHE02000020
78.4 KB
68 CDS

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whole genome shotgun sequence
NZ_ABHE02000021
77.4 KB
71 CDS

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whole genome shotgun sequence
NZ_ABHE02000022
112.3 KB
114 CDS

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whole genome shotgun sequence
NZ_ABHE02000023
283.1 KB
276 CDS

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whole genome shotgun sequence
NZ_ABHE02000024
146.4 KB
155 CDS

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whole genome shotgun sequence
NZ_ABHE02000025
50.4 KB
48 CDS

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whole genome shotgun sequence
NZ_ABHE02000026
348.1 KB
334 CDS

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whole genome shotgun sequence
NZ_ABHE02000027
347.4 KB
314 CDS

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whole genome shotgun sequence
NZ_ABHE02000028
42.0 KB
38 CDS

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whole genome shotgun sequence
NZ_ABHE02000029
302.2 KB
281 CDS

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whole genome shotgun sequence
NZ_ABHE02000030
126.6 KB
108 CDS

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whole genome shotgun sequence
NZ_ABHE02000031
80.3 KB
67 CDS

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whole genome shotgun sequence
NZ_ABHE02000032
51.9 KB
37 CDS

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whole genome shotgun sequence
NZ_ABHE02000033
6.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ABHE02000034
138.4 KB
119 CDS

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whole genome shotgun sequence
NZ_ABHE02000035
144.0 KB
119 CDS

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whole genome shotgun sequence
NZ_ABHE02000036
123.2 KB
108 CDS

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whole genome shotgun sequence
NZ_ABHE02000037
235.6 KB
211 CDS

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whole genome shotgun sequence
NZ_ABHE02000038
37.1 KB
38 CDS

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whole genome shotgun sequence
NZ_ABHE02000039
94.0 KB
100 CDS

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whole genome shotgun sequence
NZ_ABHE02000040
38.3 KB
41 CDS

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whole genome shotgun sequence
NZ_ABHE02000041
4.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHE02000042
53.9 KB
61 CDS

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whole genome shotgun sequence
NZ_ABHE02000043
70.5 KB
75 CDS

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whole genome shotgun sequence
NZ_ABHE02000044
526 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABHE02000045
861 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABHE02000046
922 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABHE02000047
952 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABHE02000048
985 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABHE02000049
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHE02000050
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHE02000051
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABHE02000052
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHE02000053
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABHE02000054
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHE02000055
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHE02000056
3.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHE02000057
5.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHE02000058
10.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ABHE02000059
17.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ABHE02000060
17.6 KB
19 CDS

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whole genome shotgun sequence
NZ_ABHE02000061
24.8 KB
24 CDS

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whole genome shotgun sequence
NZ_ABHE02000062
28.0 KB
26 CDS

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whole genome shotgun sequence
NZ_ABHE02000063
31.9 KB
41 CDS

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whole genome shotgun sequence
NZ_ABHE02000064
36.2 KB
43 CDS

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whole genome shotgun sequence
NZ_ABHE02000065
44.2 KB
49 CDS

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whole genome shotgun sequence
NZ_ABHE02000066
78.5 KB
80 CDS

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Taxonomy

External Links

Clostridium difficile QCD-76w55

Search Genome

Sequences

PubMed Search for Clostridium difficile QCD-76w55

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