Clostridium difficile QCD-97b34

McGill University, Canada

GC Content: 28.3%, Released Date: Nov. 5, 2007 #17954

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABHF02000001
9.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ABHF02000002
52.8 KB
44 CDS

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whole genome shotgun sequence
NZ_ABHF02000003
15.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ABHF02000004
21.4 KB
39 CDS

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whole genome shotgun sequence
NZ_ABHF02000005
94.8 KB
82 CDS

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whole genome shotgun sequence
NZ_ABHF02000006
130.6 KB
134 CDS

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whole genome shotgun sequence
NZ_ABHF02000007
65.5 KB
61 CDS

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whole genome shotgun sequence
NZ_ABHF02000008
13.8 KB
17 CDS

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whole genome shotgun sequence
NZ_ABHF02000009
5.3 KB
7 CDS

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whole genome shotgun sequence
NZ_ABHF02000010
27.8 KB
22 CDS

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whole genome shotgun sequence
NZ_ABHF02000011
36.2 KB
36 CDS

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whole genome shotgun sequence
NZ_ABHF02000012
72.5 KB
62 CDS

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whole genome shotgun sequence
NZ_ABHF02000013
4.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABHF02000014
11.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ABHF02000015
20.6 KB
17 CDS

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whole genome shotgun sequence
NZ_ABHF02000016
21.3 KB
19 CDS

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whole genome shotgun sequence
NZ_ABHF02000017
7.1 KB
6 CDS

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whole genome shotgun sequence
NZ_ABHF02000018
184.2 KB
148 CDS

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whole genome shotgun sequence
NZ_ABHF02000019
111.2 KB
109 CDS

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whole genome shotgun sequence
NZ_ABHF02000020
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHF02000021
19.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ABHF02000022
78.4 KB
66 CDS

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whole genome shotgun sequence
NZ_ABHF02000023
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABHF02000024
74.9 KB
70 CDS

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whole genome shotgun sequence
NZ_ABHF02000025
111.3 KB
113 CDS

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whole genome shotgun sequence
NZ_ABHF02000026
282.2 KB
274 CDS

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whole genome shotgun sequence
NZ_ABHF02000027
145.5 KB
156 CDS

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whole genome shotgun sequence
NZ_ABHF02000028
49.4 KB
47 CDS

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whole genome shotgun sequence
NZ_ABHF02000029
252.4 KB
230 CDS

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whole genome shotgun sequence
NZ_ABHF02000030
95.2 KB
100 CDS

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whole genome shotgun sequence
NZ_ABHF02000031
345.2 KB
311 CDS

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whole genome shotgun sequence
NZ_ABHF02000032
110.2 KB
107 CDS

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whole genome shotgun sequence
NZ_ABHF02000033
230.7 KB
205 CDS

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whole genome shotgun sequence
NZ_ABHF02000034
125.5 KB
106 CDS

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whole genome shotgun sequence
NZ_ABHF02000035
131.4 KB
104 CDS

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whole genome shotgun sequence
NZ_ABHF02000036
5.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ABHF02000037
137.4 KB
120 CDS

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whole genome shotgun sequence
NZ_ABHF02000038
42.0 KB
37 CDS

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whole genome shotgun sequence
NZ_ABHF02000039
101.0 KB
81 CDS

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whole genome shotgun sequence
NZ_ABHF02000040
358.0 KB
320 CDS

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whole genome shotgun sequence
NZ_ABHF02000041
36.9 KB
38 CDS

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whole genome shotgun sequence
NZ_ABHF02000042
94.0 KB
100 CDS

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whole genome shotgun sequence
NZ_ABHF02000043
36.2 KB
40 CDS

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whole genome shotgun sequence
NZ_ABHF02000044
3.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHF02000045
53.7 KB
60 CDS

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whole genome shotgun sequence
NZ_ABHF02000046
70.5 KB
77 CDS

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whole genome shotgun sequence
NZ_ABHF02000047
527 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABHF02000048
540 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABHF02000049
803 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABHF02000050
974 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABHF02000051
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHF02000052
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHF02000053
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHF02000054
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHF02000055
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABHF02000056
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHF02000057
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ABHF02000058
2.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ABHF02000059
5.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABHF02000060
44.2 KB
67 CDS

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Taxonomy

External Links

Clostridium difficile QCD-97b34

Search Genome

Sequences

PubMed Search for Clostridium difficile QCD-97b34

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