Clostridium novyi NT

Johns Hopkins Kimmel Comprehensive Cancer Center

Genome Size: 2.5 megabases, GC Content: 28.9%, Released Date: Nov. 17, 2006 #16893

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_008593
2.4 MB
2315 CDS

Table view
Circular View
Artemis Viewer

References

The genome and transcriptomes of the anti-tumor agent Clostridium novyi-NT
Bettegowda,C., Huang,X., Lin,J., Cheong,I., Kohli,M., Szabo,S.A., Zhang,X., Diaz,L.A. Jr., Velculescu,V.E., Parmigiani,G., Kinzler,K.W., Vogelstein,B. and Zhou,S. Nat. Biotechnol. 24 (12), 1573-1580 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Clostridium novyi NT

Search Genome

Sequences

References

Related Genomes