Clostridium perfringens B str. ATCC 3626

J. Craig Venter Institute

GC Content: 28.4%, Released Date: July 11, 2007 #17962

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABDV01000001
292.6 KB
260 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000002
286.6 KB
242 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000003
181.8 KB
149 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000004
168.9 KB
145 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000005
168.0 KB
145 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000006
158.3 KB
121 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000007
156.1 KB
137 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000008
135.0 KB
119 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000009
102.0 KB
96 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000010
97.1 KB
82 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000011
89.6 KB
60 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000012
86.7 KB
82 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000013
83.9 KB
66 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000014
81.7 KB
72 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000015
77.7 KB
68 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000016
77.6 KB
60 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000017
77.3 KB
84 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000018
76.3 KB
77 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000019
70.9 KB
79 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000020
68.8 KB
69 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000021
67.6 KB
62 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000022
67.1 KB
56 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000023
65.2 KB
61 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000024
64.2 KB
45 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000025
63.7 KB
52 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000026
58.6 KB
68 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000027
57.5 KB
77 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000028
53.9 KB
49 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000029
51.2 KB
53 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000030
38.6 KB
26 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000031
35.3 KB
42 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000032
34.8 KB
26 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000033
34.3 KB
30 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000034
33.4 KB
21 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000035
32.1 KB
18 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000036
27.5 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000037
26.4 KB
32 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000038
26.0 KB
20 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000039
24.8 KB
18 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000040
22.6 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000041
21.5 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000042
19.9 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000043
19.4 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000044
19.3 KB
33 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000045
18.7 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000046
18.4 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000047
15.8 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000048
14.9 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000049
14.8 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000050
14.0 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000051
14.0 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000052
13.7 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000053
13.6 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000054
12.7 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000055
12.2 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000056
11.9 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000057
11.8 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000058
11.6 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000059
11.3 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000060
11.1 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000061
8.9 KB
16 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000062
5.6 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000063
5.2 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000064
5.2 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000065
3.6 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000066
3.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000067
2.8 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000068
2.8 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000069
2.6 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000070
2.5 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000071
2.5 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000072
2.4 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000073
2.4 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000074
2.1 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000075
1.9 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000076
1.9 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000077
1.8 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000078
1.6 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000079
1.6 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000080
1.5 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000081
1.4 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000082
1.4 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000083
1.4 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000084
1.3 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000085
1.3 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000086
1.2 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000087
1.1 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000088
1.1 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000089
1.1 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000090
1.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000091
1.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000092
1.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000093
1.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000094
1.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000095
1016 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000096
1002 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000097
992 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDV01000098
971 bytes
0 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Clostridium perfringens B str. ATCC 3626

Search Genome

Sequences

PubMed Search for Clostridium perfringens B str. ATCC 3626

Related Genomes