Clostridium perfringens E str. JGS1987

J. Craig Venter Institute

GC Content: 28.1%, Released Date: July 11, 2007 #17966

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABDW01000001
264.1 KB
216 CDS

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whole genome shotgun sequence
NZ_ABDW01000002
236.6 KB
210 CDS

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whole genome shotgun sequence
NZ_ABDW01000003
175.1 KB
177 CDS

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whole genome shotgun sequence
NZ_ABDW01000004
169.3 KB
154 CDS

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whole genome shotgun sequence
NZ_ABDW01000005
161.1 KB
150 CDS

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whole genome shotgun sequence
NZ_ABDW01000006
137.1 KB
157 CDS

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whole genome shotgun sequence
NZ_ABDW01000007
133.9 KB
107 CDS

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whole genome shotgun sequence
NZ_ABDW01000008
131.7 KB
111 CDS

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whole genome shotgun sequence
NZ_ABDW01000009
123.5 KB
99 CDS

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whole genome shotgun sequence
NZ_ABDW01000010
120.9 KB
102 CDS

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whole genome shotgun sequence
NZ_ABDW01000011
104.0 KB
83 CDS

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whole genome shotgun sequence
NZ_ABDW01000012
103.1 KB
89 CDS

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whole genome shotgun sequence
NZ_ABDW01000013
94.6 KB
94 CDS

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whole genome shotgun sequence
NZ_ABDW01000014
86.8 KB
78 CDS

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whole genome shotgun sequence
NZ_ABDW01000015
82.0 KB
72 CDS

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whole genome shotgun sequence
NZ_ABDW01000016
80.5 KB
71 CDS

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whole genome shotgun sequence
NZ_ABDW01000017
78.6 KB
74 CDS

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whole genome shotgun sequence
NZ_ABDW01000018
77.4 KB
84 CDS

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whole genome shotgun sequence
NZ_ABDW01000019
75.3 KB
64 CDS

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whole genome shotgun sequence
NZ_ABDW01000020
68.3 KB
69 CDS

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whole genome shotgun sequence
NZ_ABDW01000021
66.6 KB
47 CDS

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whole genome shotgun sequence
NZ_ABDW01000022
65.2 KB
52 CDS

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whole genome shotgun sequence
NZ_ABDW01000023
63.4 KB
52 CDS

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whole genome shotgun sequence
NZ_ABDW01000024
59.6 KB
53 CDS

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whole genome shotgun sequence
NZ_ABDW01000025
59.3 KB
57 CDS

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whole genome shotgun sequence
NZ_ABDW01000026
58.6 KB
70 CDS

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whole genome shotgun sequence
NZ_ABDW01000027
57.8 KB
57 CDS

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whole genome shotgun sequence
NZ_ABDW01000028
47.6 KB
46 CDS

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whole genome shotgun sequence
NZ_ABDW01000029
47.2 KB
59 CDS

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whole genome shotgun sequence
NZ_ABDW01000030
44.6 KB
45 CDS

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whole genome shotgun sequence
NZ_ABDW01000031
41.4 KB
55 CDS

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whole genome shotgun sequence
NZ_ABDW01000032
41.3 KB
33 CDS

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whole genome shotgun sequence
NZ_ABDW01000033
39.2 KB
26 CDS

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whole genome shotgun sequence
NZ_ABDW01000034
38.8 KB
35 CDS

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whole genome shotgun sequence
NZ_ABDW01000035
38.8 KB
35 CDS

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whole genome shotgun sequence
NZ_ABDW01000036
37.3 KB
33 CDS

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whole genome shotgun sequence
NZ_ABDW01000037
36.2 KB
22 CDS

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whole genome shotgun sequence
NZ_ABDW01000038
34.5 KB
25 CDS

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whole genome shotgun sequence
NZ_ABDW01000039
34.3 KB
23 CDS

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whole genome shotgun sequence
NZ_ABDW01000040
32.2 KB
23 CDS

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whole genome shotgun sequence
NZ_ABDW01000041
31.6 KB
25 CDS

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whole genome shotgun sequence
NZ_ABDW01000042
30.4 KB
32 CDS

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whole genome shotgun sequence
NZ_ABDW01000043
29.3 KB
23 CDS

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whole genome shotgun sequence
NZ_ABDW01000044
28.0 KB
26 CDS

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whole genome shotgun sequence
NZ_ABDW01000045
27.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ABDW01000046
26.4 KB
29 CDS

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whole genome shotgun sequence
NZ_ABDW01000047
25.7 KB
23 CDS

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whole genome shotgun sequence
NZ_ABDW01000048
21.5 KB
14 CDS

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whole genome shotgun sequence
NZ_ABDW01000049
21.0 KB
18 CDS

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whole genome shotgun sequence
NZ_ABDW01000050
20.0 KB
20 CDS

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whole genome shotgun sequence
NZ_ABDW01000051
20.0 KB
21 CDS

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whole genome shotgun sequence
NZ_ABDW01000052
17.7 KB
15 CDS

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whole genome shotgun sequence
NZ_ABDW01000053
17.3 KB
17 CDS

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whole genome shotgun sequence
NZ_ABDW01000054
17.1 KB
14 CDS

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whole genome shotgun sequence
NZ_ABDW01000055
16.1 KB
15 CDS

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whole genome shotgun sequence
NZ_ABDW01000056
16.0 KB
16 CDS

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whole genome shotgun sequence
NZ_ABDW01000057
14.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ABDW01000058
13.9 KB
17 CDS

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whole genome shotgun sequence
NZ_ABDW01000059
13.7 KB
16 CDS

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whole genome shotgun sequence
NZ_ABDW01000060
13.6 KB
8 CDS

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whole genome shotgun sequence
NZ_ABDW01000061
13.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABDW01000062
13.4 KB
12 CDS

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whole genome shotgun sequence
NZ_ABDW01000063
13.0 KB
14 CDS

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whole genome shotgun sequence
NZ_ABDW01000064
13.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ABDW01000065
12.5 KB
10 CDS

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whole genome shotgun sequence
NZ_ABDW01000066
11.6 KB
8 CDS

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whole genome shotgun sequence
NZ_ABDW01000067
11.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ABDW01000068
9.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABDW01000069
7.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ABDW01000070
5.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ABDW01000071
4.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABDW01000072
4.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABDW01000073
3.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ABDW01000074
2.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABDW01000075
2.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ABDW01000076
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABDW01000077
2.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000078
2.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABDW01000079
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000080
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000081
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000082
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000083
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000084
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000085
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABDW01000086
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABDW01000087
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000088
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000089
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000090
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000091
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000092
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000093
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABDW01000094
1018 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000095
1017 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000096
1005 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000097
979 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000098
959 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000099
953 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABDW01000100
941 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABDW01000101
632 bytes
0 CDS

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Taxonomy

External Links

Clostridium perfringens E str. JGS1987

Search Genome

Sequences

PubMed Search for Clostridium perfringens E str. JGS1987

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