Clostridium perfringens NCTC 8239

J. Craig Venter Institute

GC Content: 28.7%, Released Date: July 11, 2007 #17967

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABDY01000001
512.3 KB
472 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000002
462.4 KB
414 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000003
340.8 KB
285 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000004
163.9 KB
152 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000005
143.5 KB
131 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000006
131.4 KB
127 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000007
131.3 KB
91 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000008
97.5 KB
82 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000009
83.6 KB
60 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000010
80.3 KB
75 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000011
78.9 KB
63 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000012
76.9 KB
79 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000013
76.7 KB
60 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000014
74.4 KB
64 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000015
69.0 KB
59 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000016
64.9 KB
51 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000017
52.0 KB
46 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000018
49.8 KB
41 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000019
44.4 KB
36 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000020
39.9 KB
36 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000021
36.8 KB
22 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000022
35.9 KB
35 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000023
35.2 KB
42 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000024
35.2 KB
32 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000025
32.9 KB
34 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000026
32.2 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000027
29.8 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000028
27.3 KB
22 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000029
26.3 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000030
24.2 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000031
21.5 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000032
20.9 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000033
15.8 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000034
14.4 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000035
13.6 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000036
12.3 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000037
12.1 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000038
11.2 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000039
10.0 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000040
2.8 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000041
2.6 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000042
2.3 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000043
2.2 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000044
2.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000045
1.6 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000046
1.3 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000047
1.3 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000048
1.3 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000049
1.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000050
1.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000051
1.0 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000052
1.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000053
992 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000054
955 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABDY01000055
893 bytes
0 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Clostridium perfringens NCTC 8239

Search Genome

Sequences

PubMed Search for Clostridium perfringens NCTC 8239

Related Genomes