Clostridium perfringens str. 13

University of Kyushu

Genome Size: 3.05 megabases, GC Content: 28.5%, Released Date: Jan. 17, 2002 #16896

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_003366
2.9 MB
2660 CDS

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plasmid pCP13
NC_003042
53.0 KB
63 CDS

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Circular View
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References

Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater
Shimizu,T., Ohtani,K., Hirakawa,H., Ohshima,K., Yamashita,A., Shiba,T., Ogasawara,N., Hattori,M., Kuhara,S. and Hayashi,H. Proc. Natl. Acad. Sci. U.S.A. 99 (2), 996-1001 (2002)
PubMed, PubGet, HubMed

Taxonomy

External Links

Clostridium perfringens str. 13

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Sequences

References

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