Clostridium scindens ATCC 35704

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 46.4%, Released Date: Oct. 3, 2007 #17969

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABFY02000001
14.3 KB
17 CDS

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whole genome shotgun sequence
NZ_ABFY02000002
107.1 KB
121 CDS

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whole genome shotgun sequence
NZ_ABFY02000003
94.8 KB
107 CDS

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whole genome shotgun sequence
NZ_ABFY02000004
838 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFY02000005
1.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABFY02000006
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFY02000007
867 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFY02000008
76.9 KB
101 CDS

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whole genome shotgun sequence
NZ_ABFY02000009
388.2 KB
434 CDS

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whole genome shotgun sequence
NZ_ABFY02000010
239.1 KB
267 CDS

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whole genome shotgun sequence
NZ_ABFY02000011
9.6 KB
11 CDS

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whole genome shotgun sequence
NZ_ABFY02000012
153.9 KB
167 CDS

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whole genome shotgun sequence
NZ_ABFY02000013
159.2 KB
166 CDS

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whole genome shotgun sequence
NZ_ABFY02000014
75.6 KB
123 CDS

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whole genome shotgun sequence
NZ_ABFY02000015
109.3 KB
121 CDS

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whole genome shotgun sequence
NZ_ABFY02000016
169.0 KB
196 CDS

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whole genome shotgun sequence
NZ_ABFY02000017
43.9 KB
51 CDS

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whole genome shotgun sequence
NZ_ABFY02000018
28.2 KB
32 CDS

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whole genome shotgun sequence
NZ_ABFY02000019
2.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ABFY02000020
60.4 KB
59 CDS

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whole genome shotgun sequence
NZ_ABFY02000021
975 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFY02000022
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFY02000023
27.6 KB
26 CDS

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whole genome shotgun sequence
NZ_ABFY02000024
2.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFY02000025
2.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFY02000026
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFY02000027
3.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFY02000028
43.0 KB
50 CDS

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whole genome shotgun sequence
NZ_ABFY02000029
28.6 KB
32 CDS

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whole genome shotgun sequence
NZ_ABFY02000030
182.7 KB
216 CDS

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whole genome shotgun sequence
NZ_ABFY02000031
16.7 KB
20 CDS

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whole genome shotgun sequence
NZ_ABFY02000032
67.4 KB
70 CDS

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whole genome shotgun sequence
NZ_ABFY02000033
90.1 KB
98 CDS

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whole genome shotgun sequence
NZ_ABFY02000034
129.6 KB
144 CDS

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whole genome shotgun sequence
NZ_ABFY02000035
56.9 KB
66 CDS

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whole genome shotgun sequence
NZ_ABFY02000036
20.1 KB
30 CDS

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whole genome shotgun sequence
NZ_ABFY02000037
44.7 KB
48 CDS

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whole genome shotgun sequence
NZ_ABFY02000038
78.9 KB
85 CDS

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whole genome shotgun sequence
NZ_ABFY02000039
2.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABFY02000040
863 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFY02000041
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFY02000042
944 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFY02000043
37.5 KB
42 CDS

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whole genome shotgun sequence
NZ_ABFY02000044
1000 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFY02000045
911 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFY02000046
35.9 KB
46 CDS

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whole genome shotgun sequence
NZ_ABFY02000047
2.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABFY02000048
855 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABFY02000049
170.4 KB
180 CDS

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whole genome shotgun sequence
NZ_ABFY02000050
93.2 KB
104 CDS

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whole genome shotgun sequence
NZ_ABFY02000051
2.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFY02000052
4.1 KB
6 CDS

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whole genome shotgun sequence
NZ_ABFY02000053
6.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ABFY02000054
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFY02000055
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFY02000056
7.8 KB
11 CDS

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whole genome shotgun sequence
NZ_ABFY02000057
2.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFY02000058
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFY02000059
461 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFY02000060
703 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABFY02000061
37.4 KB
52 CDS

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whole genome shotgun sequence
NZ_ABFY02000062
90.7 KB
93 CDS

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whole genome shotgun sequence
NZ_ABFY02000063
22.2 KB
22 CDS

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whole genome shotgun sequence
NZ_ABFY02000064
2.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFY02000065
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFY02000066
3.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFY02000067
374.3 KB
427 CDS

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whole genome shotgun sequence
NZ_ABFY02000068
90.8 KB
96 CDS

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Taxonomy

External Links

Clostridium scindens ATCC 35704

Search Genome

Sequences

PubMed Search for Clostridium scindens ATCC 35704

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