Clostridium sp. SS2/1

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 37.2%, Released Date: Oct. 10, 2007 #17972

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABGC03000001
2.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABGC03000002
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABGC03000003
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABGC03000004
98.0 KB
94 CDS

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whole genome shotgun sequence
NZ_ABGC03000005
804 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABGC03000006
843 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABGC03000007
29.1 KB
28 CDS

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whole genome shotgun sequence
NZ_ABGC03000008
48.4 KB
43 CDS

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whole genome shotgun sequence
NZ_ABGC03000009
744 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABGC03000010
726 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABGC03000011
19.7 KB
18 CDS

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whole genome shotgun sequence
NZ_ABGC03000012
15.8 KB
17 CDS

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whole genome shotgun sequence
NZ_ABGC03000013
4.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ABGC03000014
860 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGC03000015
876 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGC03000016
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABGC03000017
129.0 KB
125 CDS

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whole genome shotgun sequence
NZ_ABGC03000018
88.3 KB
94 CDS

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whole genome shotgun sequence
NZ_ABGC03000019
2.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABGC03000020
43.5 KB
45 CDS

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whole genome shotgun sequence
NZ_ABGC03000021
829 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABGC03000022
2.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ABGC03000023
226.3 KB
220 CDS

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whole genome shotgun sequence
NZ_ABGC03000024
869 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGC03000025
4.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ABGC03000026
22.3 KB
29 CDS

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whole genome shotgun sequence
NZ_ABGC03000027
76.8 KB
79 CDS

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whole genome shotgun sequence
NZ_ABGC03000028
57.4 KB
49 CDS

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whole genome shotgun sequence
NZ_ABGC03000029
113.9 KB
133 CDS

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whole genome shotgun sequence
NZ_ABGC03000030
138.4 KB
153 CDS

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whole genome shotgun sequence
NZ_ABGC03000031
37.2 KB
33 CDS

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whole genome shotgun sequence
NZ_ABGC03000032
162.4 KB
150 CDS

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whole genome shotgun sequence
NZ_ABGC03000033
54.9 KB
56 CDS

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whole genome shotgun sequence
NZ_ABGC03000034
476.5 KB
517 CDS

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whole genome shotgun sequence
NZ_ABGC03000035
154.4 KB
166 CDS

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whole genome shotgun sequence
NZ_ABGC03000036
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABGC03000037
7.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ABGC03000038
2.7 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGC03000039
98.1 KB
97 CDS

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whole genome shotgun sequence
NZ_ABGC03000040
161.8 KB
181 CDS

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whole genome shotgun sequence
NZ_ABGC03000041
203.4 KB
229 CDS

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whole genome shotgun sequence
NZ_ABGC03000042
573.3 KB
576 CDS

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Taxonomy

External Links

Clostridium sp. SS2/1

Search Genome

Sequences

PubMed Search for Clostridium sp. SS2/1

Related Genomes