Clostridium tetani E88

University of Goettingen

Genome Size: 2.87 megabases, GC Content: 28.6%, Released Date: Jan. 29, 2003 #16898

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_004557
2.7 MB
2373 CDS

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plasmid pE88
NC_004565
72.3 KB
59 CDS

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Circular View
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References

The genome sequence of Clostridium tetani, the causative agent of tetanus disease
Brueggemann,H., Baumer,S., Fricke,W.F., Wiezer,A., Liesegang,H., Decker,I., Herzberg,C., Martinez-Arias,R., Merkl,R., Henne,A. and Gottschalk,G. Proc. Natl. Acad. Sci. U.S.A. 100 (3), 1316-1321 (2003)
PubMed, PubGet, HubMed

Taxonomy

External Links

Clostridium tetani E88

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Sequences

References

Related Genomes