Clostridium thermocellum DSM 2360

DOE Joint Genome Institute

Released Date: Aug. 17, 2009 #17975

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACVX01000001
275.3 KB
257 CDS

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whole genome shotgun sequence
NZ_ACVX01000002
154.0 KB
142 CDS

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whole genome shotgun sequence
NZ_ACVX01000003
127.8 KB
122 CDS

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whole genome shotgun sequence
NZ_ACVX01000004
123.9 KB
109 CDS

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whole genome shotgun sequence
NZ_ACVX01000005
117.5 KB
119 CDS

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whole genome shotgun sequence
NZ_ACVX01000006
116.4 KB
102 CDS

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whole genome shotgun sequence
NZ_ACVX01000007
114.8 KB
106 CDS

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whole genome shotgun sequence
NZ_ACVX01000008
103.4 KB
97 CDS

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whole genome shotgun sequence
NZ_ACVX01000009
90.6 KB
76 CDS

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whole genome shotgun sequence
NZ_ACVX01000010
85.7 KB
80 CDS

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whole genome shotgun sequence
NZ_ACVX01000011
81.8 KB
74 CDS

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whole genome shotgun sequence
NZ_ACVX01000012
79.1 KB
74 CDS

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whole genome shotgun sequence
NZ_ACVX01000013
76.2 KB
67 CDS

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whole genome shotgun sequence
NZ_ACVX01000014
75.9 KB
67 CDS

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whole genome shotgun sequence
NZ_ACVX01000015
74.2 KB
64 CDS

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whole genome shotgun sequence
NZ_ACVX01000016
72.1 KB
71 CDS

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whole genome shotgun sequence
NZ_ACVX01000017
71.7 KB
69 CDS

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whole genome shotgun sequence
NZ_ACVX01000018
68.1 KB
72 CDS

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whole genome shotgun sequence
NZ_ACVX01000019
67.2 KB
66 CDS

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whole genome shotgun sequence
NZ_ACVX01000020
64.4 KB
62 CDS

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whole genome shotgun sequence
NZ_ACVX01000021
63.2 KB
47 CDS

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whole genome shotgun sequence
NZ_ACVX01000022
62.5 KB
52 CDS

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whole genome shotgun sequence
NZ_ACVX01000023
59.7 KB
63 CDS

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whole genome shotgun sequence
NZ_ACVX01000024
58.8 KB
39 CDS

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whole genome shotgun sequence
NZ_ACVX01000025
54.2 KB
52 CDS

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whole genome shotgun sequence
NZ_ACVX01000026
53.3 KB
49 CDS

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whole genome shotgun sequence
NZ_ACVX01000027
53.3 KB
64 CDS

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whole genome shotgun sequence
NZ_ACVX01000028
52.2 KB
51 CDS

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whole genome shotgun sequence
NZ_ACVX01000029
49.3 KB
40 CDS

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whole genome shotgun sequence
NZ_ACVX01000030
49.2 KB
44 CDS

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whole genome shotgun sequence
NZ_ACVX01000031
47.1 KB
39 CDS

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whole genome shotgun sequence
NZ_ACVX01000032
42.2 KB
34 CDS

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whole genome shotgun sequence
NZ_ACVX01000033
40.3 KB
36 CDS

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whole genome shotgun sequence
NZ_ACVX01000034
37.3 KB
35 CDS

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whole genome shotgun sequence
NZ_ACVX01000035
36.7 KB
40 CDS

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whole genome shotgun sequence
NZ_ACVX01000036
34.5 KB
28 CDS

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whole genome shotgun sequence
NZ_ACVX01000037
33.4 KB
27 CDS

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whole genome shotgun sequence
NZ_ACVX01000038
30.9 KB
29 CDS

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whole genome shotgun sequence
NZ_ACVX01000039
29.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ACVX01000040
27.7 KB
24 CDS

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whole genome shotgun sequence
NZ_ACVX01000041
26.7 KB
28 CDS

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whole genome shotgun sequence
NZ_ACVX01000042
24.9 KB
15 CDS

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whole genome shotgun sequence
NZ_ACVX01000043
24.1 KB
20 CDS

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whole genome shotgun sequence
NZ_ACVX01000044
21.9 KB
10 CDS

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whole genome shotgun sequence
NZ_ACVX01000045
21.0 KB
16 CDS

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whole genome shotgun sequence
NZ_ACVX01000046
20.4 KB
17 CDS

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whole genome shotgun sequence
NZ_ACVX01000047
16.6 KB
14 CDS

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whole genome shotgun sequence
NZ_ACVX01000048
16.1 KB
16 CDS

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whole genome shotgun sequence
NZ_ACVX01000049
14.7 KB
15 CDS

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whole genome shotgun sequence
NZ_ACVX01000050
14.1 KB
16 CDS

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whole genome shotgun sequence
NZ_ACVX01000051
14.0 KB
10 CDS

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whole genome shotgun sequence
NZ_ACVX01000052
13.7 KB
16 CDS

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whole genome shotgun sequence
NZ_ACVX01000053
13.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ACVX01000054
13.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ACVX01000055
13.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ACVX01000056
13.0 KB
11 CDS

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whole genome shotgun sequence
NZ_ACVX01000057
11.7 KB
11 CDS

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whole genome shotgun sequence
NZ_ACVX01000058
10.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACVX01000059
8.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ACVX01000060
8.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ACVX01000061
7.6 KB
9 CDS

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whole genome shotgun sequence
NZ_ACVX01000062
6.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ACVX01000063
4.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ACVX01000064
4.7 KB
6 CDS

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whole genome shotgun sequence
NZ_ACVX01000065
3.8 KB
6 CDS

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whole genome shotgun sequence
NZ_ACVX01000066
3.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ACVX01000067
3.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVX01000068
3.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ACVX01000069
3.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ACVX01000070
3.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ACVX01000071
3.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ACVX01000072
3.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVX01000073
3.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVX01000074
2.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACVX01000075
2.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000076
2.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ACVX01000077
2.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACVX01000078
2.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ACVX01000079
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVX01000080
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000081
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVX01000082
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVX01000083
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000084
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVX01000085
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000086
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVX01000087
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000088
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000089
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000090
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000091
1007 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000092
978 bytes
3 CDS

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whole genome shotgun sequence
NZ_ACVX01000093
931 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACVX01000094
929 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACVX01000095
926 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACVX01000096
901 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000097
729 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000098
720 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000099
705 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000100
705 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000101
692 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000102
677 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000103
633 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACVX01000104
609 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000105
602 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000106
548 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000107
542 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000108
536 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000109
525 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVX01000110
512 bytes
1 CDS

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Taxonomy

External Links

Clostridium thermocellum DSM 2360

Search Genome

Sequences

PubMed Search for Clostridium thermocellum DSM 2360

Related Genomes