Collinsella intestinalis DSM 13280

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 62.5%, Released Date: Oct. 2, 2008 #17978

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABXH02000001
3.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000002
119.8 KB
110 CDS

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whole genome shotgun sequence
NZ_ABXH02000003
128.3 KB
145 CDS

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whole genome shotgun sequence
NZ_ABXH02000004
67.4 KB
73 CDS

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whole genome shotgun sequence
NZ_ABXH02000005
123.0 KB
155 CDS

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whole genome shotgun sequence
NZ_ABXH02000006
462 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXH02000007
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXH02000008
85.7 KB
80 CDS

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whole genome shotgun sequence
NZ_ABXH02000009
18.3 KB
14 CDS

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whole genome shotgun sequence
NZ_ABXH02000010
648 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXH02000011
26.9 KB
26 CDS

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whole genome shotgun sequence
NZ_ABXH02000012
250 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000013
130.0 KB
131 CDS

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whole genome shotgun sequence
NZ_ABXH02000014
26.2 KB
33 CDS

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whole genome shotgun sequence
NZ_ABXH02000015
104.1 KB
113 CDS

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whole genome shotgun sequence
NZ_ABXH02000016
97.7 KB
106 CDS

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whole genome shotgun sequence
NZ_ABXH02000017
36.5 KB
34 CDS

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whole genome shotgun sequence
NZ_ABXH02000018
51.9 KB
58 CDS

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whole genome shotgun sequence
NZ_ABXH02000019
88.5 KB
85 CDS

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whole genome shotgun sequence
NZ_ABXH02000020
2.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXH02000021
6.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXH02000022
4.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXH02000023
170 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000024
389 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXH02000025
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXH02000026
2.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXH02000027
948 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABXH02000028
13.8 KB
10 CDS

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whole genome shotgun sequence
NZ_ABXH02000029
16.9 KB
17 CDS

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whole genome shotgun sequence
NZ_ABXH02000030
108.8 KB
99 CDS

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whole genome shotgun sequence
NZ_ABXH02000031
68.8 KB
56 CDS

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whole genome shotgun sequence
NZ_ABXH02000032
164 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXH02000033
33.8 KB
33 CDS

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whole genome shotgun sequence
NZ_ABXH02000034
22.1 KB
20 CDS

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whole genome shotgun sequence
NZ_ABXH02000035
30.1 KB
30 CDS

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whole genome shotgun sequence
NZ_ABXH02000036
5.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ABXH02000037
2.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000038
797 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABXH02000039
49.3 KB
49 CDS

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whole genome shotgun sequence
NZ_ABXH02000040
30.5 KB
24 CDS

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whole genome shotgun sequence
NZ_ABXH02000041
112.5 KB
106 CDS

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whole genome shotgun sequence
NZ_ABXH02000042
20.1 KB
21 CDS

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whole genome shotgun sequence
NZ_ABXH02000043
90 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000044
237 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000045
536 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000046
983 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000047
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000048
159 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000049
100 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000050
114 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABXH02000051
39.0 KB
39 CDS

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whole genome shotgun sequence
NZ_ABXH02000052
35.3 KB
35 CDS

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whole genome shotgun sequence
NZ_ABXH02000053
780 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABXH02000054
35.6 KB
33 CDS

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whole genome shotgun sequence
NZ_ABXH02000055
4.6 KB
9 CDS

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Taxonomy

External Links

Collinsella intestinalis DSM 13280

Search Genome

Sequences

PubMed Search for Collinsella intestinalis DSM 13280

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