Collinsella stercoris DSM 13279

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 63.2%, Released Date: Oct. 2, 2008 #17979

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABXJ01000001
10.3 KB
11 CDS

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whole genome shotgun sequence
NZ_ABXJ01000002
3.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000003
21.7 KB
23 CDS

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whole genome shotgun sequence
NZ_ABXJ01000004
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000005
10.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ABXJ01000006
21.5 KB
28 CDS

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whole genome shotgun sequence
NZ_ABXJ01000007
14.1 KB
14 CDS

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whole genome shotgun sequence
NZ_ABXJ01000008
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000009
11.1 KB
16 CDS

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whole genome shotgun sequence
NZ_ABXJ01000010
20.8 KB
18 CDS

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whole genome shotgun sequence
NZ_ABXJ01000011
3.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXJ01000012
71.9 KB
72 CDS

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whole genome shotgun sequence
NZ_ABXJ01000013
44.7 KB
50 CDS

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whole genome shotgun sequence
NZ_ABXJ01000014
35.1 KB
41 CDS

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whole genome shotgun sequence
NZ_ABXJ01000015
16.7 KB
21 CDS

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whole genome shotgun sequence
NZ_ABXJ01000016
8.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ABXJ01000017
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000018
28.6 KB
29 CDS

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whole genome shotgun sequence
NZ_ABXJ01000019
3.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXJ01000020
8.2 KB
9 CDS

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whole genome shotgun sequence
NZ_ABXJ01000021
8.4 KB
6 CDS

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whole genome shotgun sequence
NZ_ABXJ01000022
20.1 KB
22 CDS

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whole genome shotgun sequence
NZ_ABXJ01000023
1.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000024
9.4 KB
8 CDS

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whole genome shotgun sequence
NZ_ABXJ01000025
7.9 KB
13 CDS

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whole genome shotgun sequence
NZ_ABXJ01000026
1.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000027
63.8 KB
60 CDS

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whole genome shotgun sequence
NZ_ABXJ01000028
7.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ABXJ01000029
28.7 KB
32 CDS

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whole genome shotgun sequence
NZ_ABXJ01000030
55.9 KB
58 CDS

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whole genome shotgun sequence
NZ_ABXJ01000031
25.6 KB
21 CDS

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whole genome shotgun sequence
NZ_ABXJ01000032
3.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXJ01000033
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000034
20.4 KB
24 CDS

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whole genome shotgun sequence
NZ_ABXJ01000035
11.4 KB
11 CDS

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whole genome shotgun sequence
NZ_ABXJ01000036
20.4 KB
30 CDS

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whole genome shotgun sequence
NZ_ABXJ01000037
5.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXJ01000038
10.2 KB
12 CDS

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whole genome shotgun sequence
NZ_ABXJ01000039
5.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000040
14.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ABXJ01000041
18.0 KB
18 CDS

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whole genome shotgun sequence
NZ_ABXJ01000042
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000043
15.3 KB
20 CDS

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whole genome shotgun sequence
NZ_ABXJ01000044
4.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXJ01000045
10.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ABXJ01000046
8.7 KB
10 CDS

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whole genome shotgun sequence
NZ_ABXJ01000047
8.4 KB
11 CDS

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whole genome shotgun sequence
NZ_ABXJ01000048
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000049
12.9 KB
14 CDS

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whole genome shotgun sequence
NZ_ABXJ01000050
10.4 KB
13 CDS

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whole genome shotgun sequence
NZ_ABXJ01000051
3.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXJ01000052
16.7 KB
10 CDS

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whole genome shotgun sequence
NZ_ABXJ01000053
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000054
6.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000055
103.7 KB
112 CDS

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whole genome shotgun sequence
NZ_ABXJ01000056
13.4 KB
15 CDS

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whole genome shotgun sequence
NZ_ABXJ01000057
29.0 KB
23 CDS

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whole genome shotgun sequence
NZ_ABXJ01000058
5.6 KB
6 CDS

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whole genome shotgun sequence
NZ_ABXJ01000059
40.9 KB
41 CDS

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whole genome shotgun sequence
NZ_ABXJ01000060
31.4 KB
20 CDS

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whole genome shotgun sequence
NZ_ABXJ01000061
18.2 KB
21 CDS

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whole genome shotgun sequence
NZ_ABXJ01000062
10.0 KB
18 CDS

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whole genome shotgun sequence
NZ_ABXJ01000063
3.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000064
1.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000065
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000066
10.2 KB
15 CDS

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whole genome shotgun sequence
NZ_ABXJ01000067
3.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000068
76.2 KB
71 CDS

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whole genome shotgun sequence
NZ_ABXJ01000069
98.0 KB
111 CDS

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whole genome shotgun sequence
NZ_ABXJ01000070
17.9 KB
19 CDS

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whole genome shotgun sequence
NZ_ABXJ01000071
2.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXJ01000072
18.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ABXJ01000073
24.7 KB
39 CDS

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whole genome shotgun sequence
NZ_ABXJ01000074
10.7 KB
11 CDS

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whole genome shotgun sequence
NZ_ABXJ01000075
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000076
7.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ABXJ01000077
28.7 KB
32 CDS

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whole genome shotgun sequence
NZ_ABXJ01000078
21.3 KB
25 CDS

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whole genome shotgun sequence
NZ_ABXJ01000079
5.9 KB
7 CDS

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whole genome shotgun sequence
NZ_ABXJ01000080
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000081
4.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000082
27.3 KB
29 CDS

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whole genome shotgun sequence
NZ_ABXJ01000083
62.5 KB
71 CDS

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whole genome shotgun sequence
NZ_ABXJ01000084
11.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ABXJ01000085
2.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000086
3.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ABXJ01000087
27.9 KB
21 CDS

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whole genome shotgun sequence
NZ_ABXJ01000088
2.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000089
12.5 KB
11 CDS

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whole genome shotgun sequence
NZ_ABXJ01000090
2.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000091
5.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXJ01000092
7.2 KB
8 CDS

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whole genome shotgun sequence
NZ_ABXJ01000093
6.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ABXJ01000094
3.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000095
26.1 KB
20 CDS

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whole genome shotgun sequence
NZ_ABXJ01000096
19.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ABXJ01000097
337 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000098
2.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000099
2.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000100
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000101
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000102
10.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ABXJ01000103
3.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000104
7.8 KB
11 CDS

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whole genome shotgun sequence
NZ_ABXJ01000105
45.2 KB
48 CDS

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whole genome shotgun sequence
NZ_ABXJ01000106
4.0 KB
8 CDS

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whole genome shotgun sequence
NZ_ABXJ01000107
15.6 KB
17 CDS

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whole genome shotgun sequence
NZ_ABXJ01000108
7.4 KB
7 CDS

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whole genome shotgun sequence
NZ_ABXJ01000109
15.3 KB
16 CDS

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whole genome shotgun sequence
NZ_ABXJ01000110
45.0 KB
47 CDS

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whole genome shotgun sequence
NZ_ABXJ01000111
22.6 KB
31 CDS

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whole genome shotgun sequence
NZ_ABXJ01000112
3.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000113
2.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000114
5.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000115
5.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXJ01000116
9.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ABXJ01000117
9.1 KB
13 CDS

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whole genome shotgun sequence
NZ_ABXJ01000118
17.6 KB
25 CDS

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whole genome shotgun sequence
NZ_ABXJ01000119
3.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ABXJ01000120
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000121
2.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000122
4.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ABXJ01000123
21.4 KB
22 CDS

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whole genome shotgun sequence
NZ_ABXJ01000124
16.9 KB
17 CDS

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whole genome shotgun sequence
NZ_ABXJ01000125
25.7 KB
29 CDS

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whole genome shotgun sequence
NZ_ABXJ01000126
9.6 KB
9 CDS

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whole genome shotgun sequence
NZ_ABXJ01000127
24.0 KB
22 CDS

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whole genome shotgun sequence
NZ_ABXJ01000128
71.7 KB
86 CDS

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whole genome shotgun sequence
NZ_ABXJ01000129
30.4 KB
28 CDS

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whole genome shotgun sequence
NZ_ABXJ01000130
29.7 KB
30 CDS

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whole genome shotgun sequence
NZ_ABXJ01000131
28.0 KB
28 CDS

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whole genome shotgun sequence
NZ_ABXJ01000132
5.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ABXJ01000133
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000134
3.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000135
8.0 KB
11 CDS

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whole genome shotgun sequence
NZ_ABXJ01000136
10.9 KB
11 CDS

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whole genome shotgun sequence
NZ_ABXJ01000137
16.6 KB
14 CDS

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whole genome shotgun sequence
NZ_ABXJ01000138
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000139
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000140
1.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000141
5.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ABXJ01000142
30.0 KB
26 CDS

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whole genome shotgun sequence
NZ_ABXJ01000143
21.7 KB
15 CDS

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whole genome shotgun sequence
NZ_ABXJ01000144
3.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000145
2.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABXJ01000146
5.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ABXJ01000147
20.8 KB
24 CDS

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whole genome shotgun sequence
NZ_ABXJ01000148
25.9 KB
29 CDS

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whole genome shotgun sequence
NZ_ABXJ01000149
44.2 KB
40 CDS

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whole genome shotgun sequence
NZ_ABXJ01000150
3.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000151
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000152
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000153
871 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000154
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000155
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000156
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000157
768 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000158
841 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000159
764 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000160
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000161
508 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000162
714 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000163
662 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000164
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABXJ01000165
561 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000166
727 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000167
741 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000168
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000169
691 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000170
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000171
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000172
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000173
906 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000174
530 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000175
849 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABXJ01000176
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABXJ01000177
782 bytes
2 CDS

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Taxonomy

External Links

Collinsella stercoris DSM 13279

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Sequences

PubMed Search for Collinsella stercoris DSM 13279

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