Congregibacter litoralis KT71

J. Craig Venter Institute

Genome Size: 1.5 megabases, GC Content: 57.7%, Released Date: Feb. 23, 2006 #17981

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAOA01000001
525.4 KB
504 CDS

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whole genome shotgun sequence
NZ_AAOA01000002
415.5 KB
381 CDS

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whole genome shotgun sequence
NZ_AAOA01000003
389.8 KB
393 CDS

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whole genome shotgun sequence
NZ_AAOA01000004
356.8 KB
335 CDS

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whole genome shotgun sequence
NZ_AAOA01000005
336.4 KB
289 CDS

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whole genome shotgun sequence
NZ_AAOA01000006
327.2 KB
314 CDS

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whole genome shotgun sequence
NZ_AAOA01000007
285.2 KB
261 CDS

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whole genome shotgun sequence
NZ_AAOA01000008
195.5 KB
179 CDS

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whole genome shotgun sequence
NZ_AAOA01000009
178.9 KB
176 CDS

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whole genome shotgun sequence
NZ_AAOA01000010
165.9 KB
142 CDS

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whole genome shotgun sequence
NZ_AAOA01000011
124.0 KB
99 CDS

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whole genome shotgun sequence
NZ_AAOA01000012
121.4 KB
114 CDS

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whole genome shotgun sequence
NZ_AAOA01000013
115.5 KB
108 CDS

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whole genome shotgun sequence
NZ_AAOA01000014
107.5 KB
106 CDS

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whole genome shotgun sequence
NZ_AAOA01000015
83.9 KB
67 CDS

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whole genome shotgun sequence
NZ_AAOA01000016
78.4 KB
71 CDS

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whole genome shotgun sequence
NZ_AAOA01000017
67.7 KB
58 CDS

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whole genome shotgun sequence
NZ_AAOA01000018
64.6 KB
68 CDS

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whole genome shotgun sequence
NZ_AAOA01000019
46.7 KB
41 CDS

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whole genome shotgun sequence
NZ_AAOA01000020
43.6 KB
40 CDS

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whole genome shotgun sequence
NZ_AAOA01000021
40.4 KB
36 CDS

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whole genome shotgun sequence
NZ_AAOA01000022
37.7 KB
36 CDS

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whole genome shotgun sequence
NZ_AAOA01000023
33.5 KB
26 CDS

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whole genome shotgun sequence
NZ_AAOA01000024
26.9 KB
30 CDS

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whole genome shotgun sequence
NZ_AAOA01000025
18.7 KB
17 CDS

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whole genome shotgun sequence
NZ_AAOA01000026
11.8 KB
13 CDS

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whole genome shotgun sequence
NZ_AAOA01000027
9.3 KB
15 CDS

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whole genome shotgun sequence
NZ_AAOA01000028
6.3 KB
6 CDS

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whole genome shotgun sequence
NZ_AAOA01000029
5.1 KB
6 CDS

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whole genome shotgun sequence
NZ_AAOA01000030
3.3 KB
5 CDS

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whole genome shotgun sequence
NZ_AAOA01000031
2.8 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOA01000032
1.2 KB
2 CDS

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References

The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov
Spring,S., Lunsdorf,H., Fuchs,B.M. and Tindall,B.J. PLoS ONE 4 (3), E4866 (2009)
PubMed, PubGet, HubMed
The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov
Spring,S., Lunsdorf,H., Fuchs,B.M. and Tindall,B.J. PLoS ONE 4 (3), E4866 (2009)
PubMed, PubGet, HubMed
Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis
Fuchs,B.M., Spring,S., Teeling,H., Quast,C., Wulf,J., Schattenhofer,M., Yan,S., Ferriera,S., Johnson,J., Glockner,F.O. and Amann,R. Proc. Natl. Acad. Sci. U.S.A. 104 (8), 2891-2896 (2007)
PubMed, PubGet, HubMed
Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis
Fuchs,B.M., Spring,S., Teeling,H., Quast,C., Wulf,J., Schattenhofer,M., Yan,S., Ferriera,S., Johnson,J., Glockner,F.O. and Amann,R. Proc. Natl. Acad. Sci. U.S.A. 104 (8), 2891-2896 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Congregibacter litoralis KT71

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Sequences

References

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