Corynebacterium ammoniagenes DSM 20306

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

Genome Size: 2.8 megabases, Released Date: May 11, 2010 #20231

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

C_ammoniagenes-1.0_Cont0.1, whole genome shotgun sequence
NZ_ADNS01000001
280.0 KB
276 CDS

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C_ammoniagenes-1.0_Cont1.1, whole genome shotgun sequence
NZ_ADNS01000002
233.0 KB
222 CDS

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C_ammoniagenes-1.0_Cont2.1, whole genome shotgun sequence
NZ_ADNS01000003
128.3 KB
121 CDS

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C_ammoniagenes-1.0_Cont3.1, whole genome shotgun sequence
NZ_ADNS01000004
191.6 KB
205 CDS

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C_ammoniagenes-1.0_Cont4.1, whole genome shotgun sequence
NZ_ADNS01000005
62.9 KB
73 CDS

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C_ammoniagenes-1.0_Cont5.1, whole genome shotgun sequence
NZ_ADNS01000006
68.6 KB
62 CDS

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C_ammoniagenes-1.0_Cont6.1, whole genome shotgun sequence
NZ_ADNS01000007
185.4 KB
178 CDS

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C_ammoniagenes-1.0_Cont7.1, whole genome shotgun sequence
NZ_ADNS01000008
11.7 KB
14 CDS

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C_ammoniagenes-1.0_Cont8.1, whole genome shotgun sequence
NZ_ADNS01000009
211.1 KB
200 CDS

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C_ammoniagenes-1.0_Cont9.1, whole genome shotgun sequence
NZ_ADNS01000010
8.1 KB
7 CDS

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C_ammoniagenes-1.0_Cont13.1, whole genome shotgun sequence
NZ_ADNS01000011
1.5 KB
0 CDS

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C_ammoniagenes-1.0_Cont19.1, whole genome shotgun sequence
NZ_ADNS01000012
170.0 KB
171 CDS

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C_ammoniagenes-1.0_Cont19.2, whole genome shotgun sequence
NZ_ADNS01000013
99.3 KB
90 CDS

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C_ammoniagenes-1.0_Cont20.1, whole genome shotgun sequence
NZ_ADNS01000014
17.9 KB
22 CDS

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C_ammoniagenes-1.0_Cont21.1, whole genome shotgun sequence
NZ_ADNS01000015
63.3 KB
71 CDS

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C_ammoniagenes-1.0_Cont21.2, whole genome shotgun sequence
NZ_ADNS01000016
26.6 KB
32 CDS

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C_ammoniagenes-1.0_Cont22.1, whole genome shotgun sequence
NZ_ADNS01000017
82.7 KB
95 CDS

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C_ammoniagenes-1.0_Cont23.1, whole genome shotgun sequence
NZ_ADNS01000018
6.2 KB
10 CDS

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C_ammoniagenes-1.0_Cont24.1, whole genome shotgun sequence
NZ_ADNS01000019
1.4 KB
0 CDS

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C_ammoniagenes-1.0_Cont26.1, whole genome shotgun sequence
NZ_ADNS01000020
6.3 KB
10 CDS

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C_ammoniagenes-1.0_Cont31.1, whole genome shotgun sequence
NZ_ADNS01000021
1.6 KB
0 CDS

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C_ammoniagenes-1.0_Cont32.1, whole genome shotgun sequence
NZ_ADNS01000022
14.9 KB
18 CDS

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C_ammoniagenes-1.0_Cont36.1, whole genome shotgun sequence
NZ_ADNS01000023
2.4 KB
2 CDS

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C_ammoniagenes-1.0_Cont39.1, whole genome shotgun sequence
NZ_ADNS01000024
1.4 KB
3 CDS

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C_ammoniagenes-1.0_Cont40.1, whole genome shotgun sequence
NZ_ADNS01000025
7.6 KB
8 CDS

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C_ammoniagenes-1.0_Cont40.2, whole genome shotgun sequence
NZ_ADNS01000026
5.2 KB
5 CDS

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C_ammoniagenes-1.0_Cont40.3, whole genome shotgun sequence
NZ_ADNS01000027
305.8 KB
282 CDS

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C_ammoniagenes-1.0_Cont54.1, whole genome shotgun sequence
NZ_ADNS01000028
4.3 KB
8 CDS

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C_ammoniagenes-1.0_Cont54.2, whole genome shotgun sequence
NZ_ADNS01000029
1.4 KB
2 CDS

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C_ammoniagenes-1.0_Cont61.1, whole genome shotgun sequence
NZ_ADNS01000030
2.0 KB
5 CDS

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C_ammoniagenes-1.0_Cont122.1, whole genome shotgun sequence
NZ_ADNS01000031
447.5 KB
409 CDS

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C_ammoniagenes-1.0_Cont122.2, whole genome shotgun sequence
NZ_ADNS01000032
48.5 KB
51 CDS

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C_ammoniagenes-1.0_Cont122.3, whole genome shotgun sequence
NZ_ADNS01000033
307 bytes
1 CDS

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C_ammoniagenes-1.0_Cont122.4, whole genome shotgun sequence
NZ_ADNS01000034
145 bytes
1 CDS

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Taxonomy

External Links

Corynebacterium ammoniagenes DSM 20306

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Sequences

PubMed Search for Corynebacterium ammoniagenes DSM 20306

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