Corynebacterium diphtheriae NCTC 13129

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Genome Size: 2.49 megabases, GC Content: 53.5%, Released Date: Nov. 7, 2003 #16905

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_002935
2.4 MB
2272 CDS

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References

The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129
Cerdeno-Tarraga,A.M., Efstratiou,A., Dover,L.G., Holden,M.T.G., Pallen,M., Bentley,S.D., Besra,G.S., Churcher,C., James,K.D., De Zoysa,A., Chillingworth,T., Cronin,A., Dowd,L., Feltwell,T., Hamlin,N., Holroyd,S., Jagels,K., Moule,S., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Thomson,N.R., Unwin,L., Whitehead,S. and Barrell B.G. Parkhill,J. Nucleic Acids Res. 31 (22), 6516-6523 (2003)
PubMed, PubGet, HubMed

Taxonomy

External Links

Corynebacterium diphtheriae NCTC 13129

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Sequences

References

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