Corynebacterium glutamicum R

Research Institute of Innovative Technology for the Earth (RITE)

Genome Size: 3.35 megabases, GC Content: 54.1%, Released Date: April 4, 2007 #16909

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_009342
3.2 MB
3052 CDS

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plasmid pCGR1
NC_009343
48.0 KB
28 CDS

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References

Comparative analysis of the Corynebacterium glutamicum group and complete genome sequence of strain R
Yukawa,H., Omumasaba,C.A., Nonaka,H., Kos,P., Okai,N., Suzuki,N., Suda,M., Tsuge,Y., Watanabe,J., Ikeda,Y., Vertes,A.A. and Inui,M. Microbiology (Reading, Engl.) 153 (PT 4), 1042-1058 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Corynebacterium glutamicum R

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Sequences

References

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