Cyanobium sp. PCC 7001

J. Craig Venter Institute

Genome Size: 2.8 megabases, GC Content: 68.7%, Released Date: July 15, 2008 #14747

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000001
8.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000002
1.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000003
30.3 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000004
1.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000005
365.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000006
63.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000007
104.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000008
54.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000009
244.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000010
474.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000011
80.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000012
40.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000013
249.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000014
196.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000015
130.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000016
191.9 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000017
14.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSE01000018
515.4 KB
0 CDS

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Taxonomy

External Links

Cyanobium sp. PCC 7001

Search Genome

Sequences

PubMed Search for Cyanobium sp. PCC 7001

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