Cyanothece sp. ATCC 51142

Washington University (WashU) , Genome Sequencing Center, Washington University in Saint Louis

Genome Size: 5.43 megabases, GC Content: 37.9%, Released Date: April 1, 2008 #16922

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle
  Welsh,E.A., Liberton,M., Stockel,J., Loh,T., Elvitigala,T., Wang,C., Wollam,A., Fulton,R.S., Clifton,S.W., Jacobs,J.M., Aurora,R., Ghosh,B.K., Sherman,L.A., Smith,R.D., Wilson,R.K. and Pakrasi,H.B. Proc. Natl. Acad. Sci. U.S.A. 105 (39), 15094-15099 (2008)
  PubMed, PubGet, HubMed

Related Genomes

• Cyanothece sp. PCC 7424
• Cyanothece sp. PCC 7425
• Cyanothece sp. PCC 8801
• Cyanothece sp. PCC 8802
• Cyanothece sp. CCY0110
• Cyanothece sp. PCC 7822
• Cyanobium sp. PCC 7001
• Microcoleus chthonoplastes PCC 7420
• Prochlorococcus marinus str. MIT 9202
• Synechococcus sp. PCC 7335
• Acaryochloris marina MBIC11017
• Gloeobacter violaceus PCC 7421
• Microcystis aeruginosa NIES-843
• Nostoc punctiforme PCC 73102
• Nostoc sp. PCC 7120
• Prochlorococcus marinus str. AS9601
• Prochlorococcus marinus str. MIT 9211
• Prochlorococcus marinus str. MIT 9215
• Prochlorococcus marinus str. MIT 9301
• Prochlorococcus marinus str. MIT 9303
• Prochlorococcus marinus str. MIT 9312
• Prochlorococcus marinus str. MIT 9313
• Prochlorococcus marinus str. MIT 9515
• Prochlorococcus marinus str. NATL1A
• Prochlorococcus marinus str. NATL2A
• Prochlorococcus marinus subsp. marinus str. CCMP1375
• Prochlorococcus marinus subsp. pastoris str. CCMP1986
• Synechococcus elongatus PCC 6301
• Synechococcus elongatus PCC 7942
• Synechococcus sp. CC9311
• Synechococcus sp. CC9605
• Synechococcus sp. CC9902
• Synechococcus sp. JA-2-3B'a(2-13)
• Synechococcus sp. JA-3-3Ab
• Synechococcus sp. PCC 7002
• Synechococcus sp. RCC307
• Synechococcus sp. WH 7803
• Synechococcus sp. WH 8102
• Synechocystis sp. PCC 6803
• Thermosynechococcus elongatus BP-1
• Trichodesmium erythraeum IMS101
• Arthrospira maxima CS-328
• Arthrospira platensis str. Paraca
• Crocosphaera watsonii WH 8501
• Leptolyngbya valderiana BDU 20041
• Lyngbya sp. PCC 8106
• Nodularia spumigena CCY9414
• Synechococcus sp. BL107
• Synechococcus sp. RS9916
• Synechococcus sp. RS9917
• Synechococcus sp. WH 5701
• Synechococcus sp. WH 7805
• Synechococcus sp. WH 8109
• cyanobacterium UCYN-A
• 'Nostoc azollae' 0708
• Anabaena variabilis ATCC 29413
• Arthrospira platensis NIES-39
• Cylindrospermopsis raciborskii CS-505
• Oscillatoria sp. PCC 6506
• Raphidiopsis brookii D9
• Synechococcus sp. CB0101
• Synechococcus sp. CB0205