Cylindrospermopsis raciborskii CS-505

FLI Jena

Genome Size: 3.9 megabases, GC Content: 40.2%, Released Date: Dec. 15, 2009 #20236

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACYA01000001
207.0 KB
193 CDS

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whole genome shotgun sequence
NZ_ACYA01000002
160.5 KB
146 CDS

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whole genome shotgun sequence
NZ_ACYA01000003
10.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ACYA01000004
5.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYA01000005
42.5 KB
44 CDS

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whole genome shotgun sequence
NZ_ACYA01000006
11.7 KB
11 CDS

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whole genome shotgun sequence
NZ_ACYA01000007
97.5 KB
101 CDS

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whole genome shotgun sequence
NZ_ACYA01000008
125.1 KB
121 CDS

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whole genome shotgun sequence
NZ_ACYA01000009
3.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACYA01000010
6.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ACYA01000011
9.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACYA01000012
12.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ACYA01000013
11.7 KB
12 CDS

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whole genome shotgun sequence
NZ_ACYA01000014
3.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYA01000015
22.0 KB
26 CDS

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whole genome shotgun sequence
NZ_ACYA01000016
27.1 KB
19 CDS

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whole genome shotgun sequence
NZ_ACYA01000017
7.2 KB
7 CDS

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whole genome shotgun sequence
NZ_ACYA01000018
29.3 KB
30 CDS

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whole genome shotgun sequence
NZ_ACYA01000019
12.1 KB
11 CDS

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whole genome shotgun sequence
NZ_ACYA01000020
51.3 KB
56 CDS

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whole genome shotgun sequence
NZ_ACYA01000021
34.7 KB
32 CDS

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whole genome shotgun sequence
NZ_ACYA01000022
82.2 KB
69 CDS

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whole genome shotgun sequence
NZ_ACYA01000023
44.6 KB
36 CDS

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whole genome shotgun sequence
NZ_ACYA01000024
15.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ACYA01000025
253.5 KB
214 CDS

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whole genome shotgun sequence
NZ_ACYA01000026
54.1 KB
48 CDS

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whole genome shotgun sequence
NZ_ACYA01000027
115.0 KB
83 CDS

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whole genome shotgun sequence
NZ_ACYA01000028
153.1 KB
127 CDS

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whole genome shotgun sequence
NZ_ACYA01000029
42.3 KB
43 CDS

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whole genome shotgun sequence
NZ_ACYA01000030
23.4 KB
21 CDS

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whole genome shotgun sequence
NZ_ACYA01000031
21.7 KB
21 CDS

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whole genome shotgun sequence
NZ_ACYA01000032
106.6 KB
83 CDS

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whole genome shotgun sequence
NZ_ACYA01000033
58.9 KB
48 CDS

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whole genome shotgun sequence
NZ_ACYA01000034
8.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ACYA01000035
10.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ACYA01000036
16.5 KB
19 CDS

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whole genome shotgun sequence
NZ_ACYA01000037
6.4 KB
6 CDS

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whole genome shotgun sequence
NZ_ACYA01000038
105.8 KB
102 CDS

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whole genome shotgun sequence
NZ_ACYA01000039
89.4 KB
88 CDS

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whole genome shotgun sequence
NZ_ACYA01000040
31.2 KB
30 CDS

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whole genome shotgun sequence
NZ_ACYA01000041
4.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ACYA01000042
12.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ACYA01000043
3.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYA01000044
14.3 KB
13 CDS

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whole genome shotgun sequence
NZ_ACYA01000045
33.0 KB
32 CDS

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whole genome shotgun sequence
NZ_ACYA01000046
21.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ACYA01000047
198.2 KB
207 CDS

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whole genome shotgun sequence
NZ_ACYA01000048
12.7 KB
7 CDS

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whole genome shotgun sequence
NZ_ACYA01000049
47.9 KB
45 CDS

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whole genome shotgun sequence
NZ_ACYA01000050
30.4 KB
28 CDS

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whole genome shotgun sequence
NZ_ACYA01000051
24.7 KB
26 CDS

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whole genome shotgun sequence
NZ_ACYA01000052
6.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ACYA01000053
18.7 KB
21 CDS

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whole genome shotgun sequence
NZ_ACYA01000054
11.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ACYA01000055
14.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ACYA01000056
180.5 KB
166 CDS

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whole genome shotgun sequence
NZ_ACYA01000057
23.3 KB
24 CDS

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whole genome shotgun sequence
NZ_ACYA01000058
41.2 KB
41 CDS

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whole genome shotgun sequence
NZ_ACYA01000059
19.9 KB
15 CDS

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whole genome shotgun sequence
NZ_ACYA01000060
86.0 KB
57 CDS

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whole genome shotgun sequence
NZ_ACYA01000061
34.3 KB
26 CDS

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whole genome shotgun sequence
NZ_ACYA01000062
24.9 KB
22 CDS

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whole genome shotgun sequence
NZ_ACYA01000063
59.8 KB
46 CDS

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whole genome shotgun sequence
NZ_ACYA01000064
184.2 KB
168 CDS

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whole genome shotgun sequence
NZ_ACYA01000065
4.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYA01000066
10.2 KB
12 CDS

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whole genome shotgun sequence
NZ_ACYA01000067
33.5 KB
30 CDS

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whole genome shotgun sequence
NZ_ACYA01000068
7.7 KB
6 CDS

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whole genome shotgun sequence
NZ_ACYA01000069
22.7 KB
26 CDS

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whole genome shotgun sequence
NZ_ACYA01000070
19.1 KB
17 CDS

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whole genome shotgun sequence
NZ_ACYA01000071
31.4 KB
31 CDS

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whole genome shotgun sequence
NZ_ACYA01000072
3.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACYA01000073
81.0 KB
72 CDS

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whole genome shotgun sequence
NZ_ACYA01000074
69.7 KB
72 CDS

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whole genome shotgun sequence
NZ_ACYA01000075
4.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACYA01000076
4.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACYA01000077
13.4 KB
14 CDS

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whole genome shotgun sequence
NZ_ACYA01000078
8.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ACYA01000079
13.9 KB
14 CDS

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whole genome shotgun sequence
NZ_ACYA01000080
5.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYA01000081
9.8 KB
14 CDS

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whole genome shotgun sequence
NZ_ACYA01000082
9.1 KB
12 CDS

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whole genome shotgun sequence
NZ_ACYA01000083
7.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ACYA01000084
4.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACYA01000085
9.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ACYA01000086
24.6 KB
19 CDS

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whole genome shotgun sequence
NZ_ACYA01000087
42.0 KB
49 CDS

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whole genome shotgun sequence
NZ_ACYA01000088
6.0 KB
6 CDS

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whole genome shotgun sequence
NZ_ACYA01000089
4.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ACYA01000090
8.4 KB
11 CDS

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whole genome shotgun sequence
NZ_ACYA01000091
79.4 KB
80 CDS

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whole genome shotgun sequence
NZ_ACYA01000092
10.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ACYA01000093
3.8 KB
3 CDS

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Taxonomy

External Links

Cylindrospermopsis raciborskii CS-505

Search Genome

Sequences

PubMed Search for Cylindrospermopsis raciborskii CS-505

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