Deferribacter desulfuricans SSM1

Japan Agency for Marine-Earth Science and Technology , National Institute of Technology and Evaluation

Genome Size: 2.51 megabases, GC Content: 30.3%, Released Date: March 5, 2010 #19851

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

DNA, complete genome
AP011529
2.1 MB
2134 CDS

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plasmid megaplasmid pDF308 DNA, complete genome
AP011530
301.3 KB
266 CDS

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References

Deferribacter desulfuricans sp. nov., a novel sulfur-, nitrate- and arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent
Takai,K., Kobayashi,H., Nealson,K.H. and Horikoshi,K. Int. J. Syst. Evol. Microbiol. 53 (PT 3), 839-846 (2003)
PubMed, PubGet, HubMed

Taxonomy

External Links

Deferribacter desulfuricans SSM1

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Sequences

References

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