Dehalococcoides sp. CBDB1

Max Planck Institute

Genome Size: 1.4 megabases, GC Content: 47.0%, Released Date: Aug. 19, 2005 #16931

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
NC_007356
1.3 MB
1458 CDS

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References

Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1
Kube,M., Beck,A., Zinder,S.H., Kuhl,H., Reinhardt,R. and Adrian,L. Nat. Biotechnol. 23 (10), 1269-1273 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Dehalococcoides sp. CBDB1

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Sequences

References

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