Desulfovibrio aespoeensis Aspo-2

JGI

Genome Size: 3.6 megabases, GC Content: 62.7%, Released Date: Dec. 10, 2009 #20238

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ADDI01000001
312.4 KB
269 CDS

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whole genome shotgun sequence
NZ_ADDI01000002
190.2 KB
198 CDS

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whole genome shotgun sequence
NZ_ADDI01000003
150.8 KB
151 CDS

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whole genome shotgun sequence
NZ_ADDI01000004
149.4 KB
154 CDS

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whole genome shotgun sequence
NZ_ADDI01000005
141.8 KB
135 CDS

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whole genome shotgun sequence
NZ_ADDI01000006
140.8 KB
137 CDS

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whole genome shotgun sequence
NZ_ADDI01000007
137.8 KB
128 CDS

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whole genome shotgun sequence
NZ_ADDI01000008
124.1 KB
114 CDS

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whole genome shotgun sequence
NZ_ADDI01000009
108.4 KB
102 CDS

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whole genome shotgun sequence
NZ_ADDI01000010
102.6 KB
97 CDS

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whole genome shotgun sequence
NZ_ADDI01000011
100.1 KB
95 CDS

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whole genome shotgun sequence
NZ_ADDI01000012
94.7 KB
77 CDS

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whole genome shotgun sequence
NZ_ADDI01000013
93.7 KB
99 CDS

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whole genome shotgun sequence
NZ_ADDI01000014
89.2 KB
82 CDS

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whole genome shotgun sequence
NZ_ADDI01000015
84.3 KB
76 CDS

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whole genome shotgun sequence
NZ_ADDI01000016
82.6 KB
71 CDS

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whole genome shotgun sequence
NZ_ADDI01000017
80.1 KB
75 CDS

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whole genome shotgun sequence
NZ_ADDI01000018
79.2 KB
68 CDS

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whole genome shotgun sequence
NZ_ADDI01000019
79.1 KB
75 CDS

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whole genome shotgun sequence
NZ_ADDI01000020
78.7 KB
84 CDS

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whole genome shotgun sequence
NZ_ADDI01000021
64.2 KB
52 CDS

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whole genome shotgun sequence
NZ_ADDI01000022
62.4 KB
47 CDS

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whole genome shotgun sequence
NZ_ADDI01000023
58.5 KB
56 CDS

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whole genome shotgun sequence
NZ_ADDI01000024
56.7 KB
57 CDS

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whole genome shotgun sequence
NZ_ADDI01000025
56.7 KB
59 CDS

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whole genome shotgun sequence
NZ_ADDI01000026
48.4 KB
69 CDS

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whole genome shotgun sequence
NZ_ADDI01000027
46.2 KB
45 CDS

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whole genome shotgun sequence
NZ_ADDI01000028
44.6 KB
43 CDS

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whole genome shotgun sequence
NZ_ADDI01000029
44.3 KB
40 CDS

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whole genome shotgun sequence
NZ_ADDI01000030
42.5 KB
41 CDS

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whole genome shotgun sequence
NZ_ADDI01000031
41.9 KB
31 CDS

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whole genome shotgun sequence
NZ_ADDI01000032
36.6 KB
38 CDS

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whole genome shotgun sequence
NZ_ADDI01000033
36.2 KB
39 CDS

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whole genome shotgun sequence
NZ_ADDI01000034
31.0 KB
28 CDS

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whole genome shotgun sequence
NZ_ADDI01000035
29.9 KB
28 CDS

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whole genome shotgun sequence
NZ_ADDI01000036
29.3 KB
24 CDS

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whole genome shotgun sequence
NZ_ADDI01000037
27.5 KB
24 CDS

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whole genome shotgun sequence
NZ_ADDI01000038
26.8 KB
26 CDS

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whole genome shotgun sequence
NZ_ADDI01000039
21.8 KB
20 CDS

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whole genome shotgun sequence
NZ_ADDI01000040
21.7 KB
18 CDS

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whole genome shotgun sequence
NZ_ADDI01000041
21.4 KB
19 CDS

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whole genome shotgun sequence
NZ_ADDI01000042
19.6 KB
16 CDS

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whole genome shotgun sequence
NZ_ADDI01000043
16.5 KB
14 CDS

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whole genome shotgun sequence
NZ_ADDI01000044
15.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ADDI01000045
14.9 KB
17 CDS

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whole genome shotgun sequence
NZ_ADDI01000046
13.7 KB
12 CDS

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whole genome shotgun sequence
NZ_ADDI01000047
13.1 KB
8 CDS

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whole genome shotgun sequence
NZ_ADDI01000048
12.9 KB
17 CDS

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whole genome shotgun sequence
NZ_ADDI01000049
11.2 KB
12 CDS

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whole genome shotgun sequence
NZ_ADDI01000050
9.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ADDI01000051
8.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ADDI01000052
7.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ADDI01000053
7.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ADDI01000054
6.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ADDI01000055
6.0 KB
6 CDS

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whole genome shotgun sequence
NZ_ADDI01000056
5.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ADDI01000057
5.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ADDI01000058
5.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ADDI01000059
3.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ADDI01000060
3.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ADDI01000061
3.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ADDI01000062
2.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ADDI01000063
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ADDI01000064
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ADDI01000065
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ADDI01000066
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ADDI01000067
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ADDI01000068
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ADDI01000069
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ADDI01000070
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ADDI01000071
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ADDI01000072
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ADDI01000073
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ADDI01000074
944 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADDI01000075
928 bytes
2 CDS

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whole genome shotgun sequence
NZ_ADDI01000076
762 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADDI01000077
726 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADDI01000078
709 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADDI01000079
547 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADDI01000080
533 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADDI01000081
529 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADDI01000082
516 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADDI01000083
512 bytes
1 CDS

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Taxonomy

External Links

Desulfovibrio aespoeensis Aspo-2

Search Genome

Sequences

PubMed Search for Desulfovibrio aespoeensis Aspo-2

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