Desulfovibrio magneticus RS-1

National Institute of Technology and Evaluation

Genome Size: 5.27 megabases, Released Date: June 11, 2009 #16949

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_012796
5.0 MB
4625 CDS

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plasmid pDMC1
NC_012797
57.3 KB
65 CDS

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plasmid pDMC2
NC_012795
8.7 KB
10 CDS

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References

Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria
Nakazawa,H., Arakaki,A., Narita-Yamada,S., Yashiro,I., Jinno,K., Aoki,N., Tsuruyama,A., Okamura,Y., Tanikawa,S., Fujita,N., Takeyama,H. and Matsunaga,T. Genome Res. 19 (10), 1801-1808 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Desulfovibrio magneticus RS-1

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Sequences

References

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