Desulfovibrio sp. FW1012B

DOE Joint Genome Institute

Genome Size: 4.2 megabases, GC Content: 66.5%, Released Date: Jan. 11, 2010 #20241

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ADFE01000001
327.2 KB
301 CDS

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whole genome shotgun sequence
NZ_ADFE01000002
191.0 KB
152 CDS

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whole genome shotgun sequence
NZ_ADFE01000003
168.7 KB
174 CDS

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whole genome shotgun sequence
NZ_ADFE01000004
154.3 KB
144 CDS

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whole genome shotgun sequence
NZ_ADFE01000005
139.3 KB
131 CDS

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whole genome shotgun sequence
NZ_ADFE01000006
136.9 KB
117 CDS

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whole genome shotgun sequence
NZ_ADFE01000007
124.1 KB
108 CDS

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whole genome shotgun sequence
NZ_ADFE01000008
119.2 KB
109 CDS

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whole genome shotgun sequence
NZ_ADFE01000009
113.7 KB
101 CDS

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whole genome shotgun sequence
NZ_ADFE01000010
113.6 KB
101 CDS

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whole genome shotgun sequence
NZ_ADFE01000011
113.5 KB
101 CDS

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whole genome shotgun sequence
NZ_ADFE01000012
111.9 KB
107 CDS

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whole genome shotgun sequence
NZ_ADFE01000013
111.0 KB
95 CDS

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whole genome shotgun sequence
NZ_ADFE01000014
100.6 KB
95 CDS

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whole genome shotgun sequence
NZ_ADFE01000015
95.6 KB
77 CDS

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whole genome shotgun sequence
NZ_ADFE01000016
93.9 KB
81 CDS

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whole genome shotgun sequence
NZ_ADFE01000017
85.8 KB
81 CDS

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whole genome shotgun sequence
NZ_ADFE01000018
79.8 KB
61 CDS

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whole genome shotgun sequence
NZ_ADFE01000019
76.5 KB
62 CDS

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whole genome shotgun sequence
NZ_ADFE01000020
67.6 KB
45 CDS

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whole genome shotgun sequence
NZ_ADFE01000021
67.2 KB
63 CDS

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whole genome shotgun sequence
NZ_ADFE01000022
65.2 KB
65 CDS

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whole genome shotgun sequence
NZ_ADFE01000023
59.4 KB
93 CDS

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whole genome shotgun sequence
NZ_ADFE01000024
58.8 KB
62 CDS

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whole genome shotgun sequence
NZ_ADFE01000025
50.3 KB
49 CDS

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whole genome shotgun sequence
NZ_ADFE01000026
48.8 KB
46 CDS

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whole genome shotgun sequence
NZ_ADFE01000027
46.4 KB
41 CDS

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whole genome shotgun sequence
NZ_ADFE01000028
46.0 KB
39 CDS

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whole genome shotgun sequence
NZ_ADFE01000029
43.6 KB
40 CDS

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whole genome shotgun sequence
NZ_ADFE01000030
41.7 KB
29 CDS

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whole genome shotgun sequence
NZ_ADFE01000031
41.6 KB
37 CDS

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whole genome shotgun sequence
NZ_ADFE01000032
37.8 KB
41 CDS

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whole genome shotgun sequence
NZ_ADFE01000033
37.1 KB
30 CDS

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whole genome shotgun sequence
NZ_ADFE01000034
36.8 KB
38 CDS

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whole genome shotgun sequence
NZ_ADFE01000035
36.7 KB
29 CDS

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whole genome shotgun sequence
NZ_ADFE01000036
36.3 KB
28 CDS

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whole genome shotgun sequence
NZ_ADFE01000037
34.8 KB
51 CDS

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whole genome shotgun sequence
NZ_ADFE01000038
30.9 KB
32 CDS

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whole genome shotgun sequence
NZ_ADFE01000039
30.9 KB
34 CDS

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whole genome shotgun sequence
NZ_ADFE01000040
30.8 KB
29 CDS

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whole genome shotgun sequence
NZ_ADFE01000041
29.1 KB
28 CDS

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whole genome shotgun sequence
NZ_ADFE01000042
28.3 KB
27 CDS

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whole genome shotgun sequence
NZ_ADFE01000043
28.0 KB
27 CDS

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whole genome shotgun sequence
NZ_ADFE01000044
26.8 KB
26 CDS

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whole genome shotgun sequence
NZ_ADFE01000045
26.7 KB
21 CDS

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whole genome shotgun sequence
NZ_ADFE01000046
24.7 KB
21 CDS

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whole genome shotgun sequence
NZ_ADFE01000047
22.5 KB
24 CDS

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whole genome shotgun sequence
NZ_ADFE01000048
22.3 KB
22 CDS

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whole genome shotgun sequence
NZ_ADFE01000049
22.1 KB
20 CDS

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whole genome shotgun sequence
NZ_ADFE01000050
20.6 KB
20 CDS

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whole genome shotgun sequence
NZ_ADFE01000051
19.4 KB
18 CDS

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whole genome shotgun sequence
NZ_ADFE01000052
19.1 KB
17 CDS

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whole genome shotgun sequence
NZ_ADFE01000053
18.7 KB
18 CDS

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whole genome shotgun sequence
NZ_ADFE01000054
17.8 KB
14 CDS

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whole genome shotgun sequence
NZ_ADFE01000055
17.3 KB
13 CDS

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whole genome shotgun sequence
NZ_ADFE01000056
17.2 KB
14 CDS

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whole genome shotgun sequence
NZ_ADFE01000057
16.6 KB
15 CDS

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whole genome shotgun sequence
NZ_ADFE01000058
16.2 KB
14 CDS

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whole genome shotgun sequence
NZ_ADFE01000059
14.9 KB
14 CDS

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whole genome shotgun sequence
NZ_ADFE01000060
14.5 KB
15 CDS

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whole genome shotgun sequence
NZ_ADFE01000061
14.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ADFE01000062
14.2 KB
11 CDS

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whole genome shotgun sequence
NZ_ADFE01000063
14.1 KB
13 CDS

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whole genome shotgun sequence
NZ_ADFE01000064
13.9 KB
15 CDS

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whole genome shotgun sequence
NZ_ADFE01000065
13.8 KB
15 CDS

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whole genome shotgun sequence
NZ_ADFE01000066
13.7 KB
16 CDS

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whole genome shotgun sequence
NZ_ADFE01000067
12.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ADFE01000068
10.0 KB
8 CDS

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whole genome shotgun sequence
NZ_ADFE01000069
9.7 KB
8 CDS

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whole genome shotgun sequence
NZ_ADFE01000070
9.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ADFE01000071
9.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ADFE01000072
9.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ADFE01000073
9.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ADFE01000074
8.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ADFE01000075
8.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ADFE01000076
8.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ADFE01000077
7.8 KB
8 CDS

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whole genome shotgun sequence
NZ_ADFE01000078
7.8 KB
6 CDS

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whole genome shotgun sequence
NZ_ADFE01000079
7.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ADFE01000080
6.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ADFE01000081
5.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ADFE01000082
5.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ADFE01000083
4.9 KB
5 CDS

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whole genome shotgun sequence
NZ_ADFE01000084
4.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ADFE01000085
3.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ADFE01000086
3.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ADFE01000087
2.8 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFE01000088
2.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFE01000089
2.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFE01000090
2.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFE01000091
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFE01000092
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFE01000093
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFE01000094
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFE01000095
997 bytes
2 CDS

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whole genome shotgun sequence
NZ_ADFE01000096
980 bytes
2 CDS

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whole genome shotgun sequence
NZ_ADFE01000097
886 bytes
1 CDS

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Taxonomy

External Links

Desulfovibrio sp. FW1012B

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Sequences

PubMed Search for Desulfovibrio sp. FW1012B

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