Desulfurococcus kamchatkensis 1221n

Centre 'Bioengineering' RAS , Institute of Microbiology, Russian Academy of Sciences

Genome Size: 1.4 megabases, GC Content: 45.3%, Released Date: Dec. 24, 2008 #16954

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
NC_011766
1.3 MB
1471 CDS

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References

Complete genome sequence of the anaerobic, protein-degrading hyperthermophilic crenarchaeon Desulfurococcus kamchatkensis
Ravin,N.V., Mardanov,A.V., Beletsky,A.V., Kublanov,I.V., Kolganova,T.V., Lebedinsky,A.V., Chernyh,N.A., Bonch-Osmolovskaya,E.A. and Skryabin,K.G. J. Bacteriol. 191 (7), 2371-2379 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Desulfurococcus kamchatkensis 1221n

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Sequences

References

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