Dethiobacter alkaliphilus AHT 1

DOE Joint Genome Institute

GC Content: 48.5%, Released Date: March 17, 2009 #18009

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACJM01000001
418.6 KB
418 CDS

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whole genome shotgun sequence
NZ_ACJM01000002
222.0 KB
238 CDS

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whole genome shotgun sequence
NZ_ACJM01000003
221.5 KB
247 CDS

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whole genome shotgun sequence
NZ_ACJM01000004
217.9 KB
215 CDS

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whole genome shotgun sequence
NZ_ACJM01000005
204.2 KB
207 CDS

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whole genome shotgun sequence
NZ_ACJM01000006
194.1 KB
214 CDS

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whole genome shotgun sequence
NZ_ACJM01000007
187.0 KB
189 CDS

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whole genome shotgun sequence
NZ_ACJM01000008
157.1 KB
145 CDS

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whole genome shotgun sequence
NZ_ACJM01000009
138.3 KB
151 CDS

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whole genome shotgun sequence
NZ_ACJM01000010
126.6 KB
131 CDS

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whole genome shotgun sequence
NZ_ACJM01000011
98.9 KB
95 CDS

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whole genome shotgun sequence
NZ_ACJM01000012
96.1 KB
92 CDS

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whole genome shotgun sequence
NZ_ACJM01000013
94.2 KB
105 CDS

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whole genome shotgun sequence
NZ_ACJM01000014
69.4 KB
76 CDS

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whole genome shotgun sequence
NZ_ACJM01000015
63.5 KB
72 CDS

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whole genome shotgun sequence
NZ_ACJM01000016
54.1 KB
66 CDS

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whole genome shotgun sequence
NZ_ACJM01000017
52.2 KB
59 CDS

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whole genome shotgun sequence
NZ_ACJM01000018
48.3 KB
49 CDS

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whole genome shotgun sequence
NZ_ACJM01000019
44.0 KB
46 CDS

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whole genome shotgun sequence
NZ_ACJM01000020
43.6 KB
53 CDS

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whole genome shotgun sequence
NZ_ACJM01000021
37.3 KB
34 CDS

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whole genome shotgun sequence
NZ_ACJM01000022
36.5 KB
34 CDS

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whole genome shotgun sequence
NZ_ACJM01000023
34.5 KB
38 CDS

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whole genome shotgun sequence
NZ_ACJM01000024
32.9 KB
38 CDS

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whole genome shotgun sequence
NZ_ACJM01000025
31.6 KB
37 CDS

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whole genome shotgun sequence
NZ_ACJM01000026
30.4 KB
33 CDS

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whole genome shotgun sequence
NZ_ACJM01000027
19.4 KB
20 CDS

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whole genome shotgun sequence
NZ_ACJM01000028
19.1 KB
17 CDS

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whole genome shotgun sequence
NZ_ACJM01000029
12.7 KB
13 CDS

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whole genome shotgun sequence
NZ_ACJM01000030
11.6 KB
9 CDS

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whole genome shotgun sequence
NZ_ACJM01000031
9.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ACJM01000032
7.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACJM01000033
7.0 KB
10 CDS

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whole genome shotgun sequence
NZ_ACJM01000034
2.2 KB
0 CDS

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Taxonomy

External Links

Dethiobacter alkaliphilus AHT 1

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Sequences

PubMed Search for Dethiobacter alkaliphilus AHT 1

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